Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PCDHGA1Q9Y5H4 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHGA1Q9Y5H4 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHGA1Q9Y5H4 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHGA1Q9Y5H4 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
PCDHGA1Q9Y5H4 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC26.03■■□□□ 1.76
PCDHGA1Q9Y5H4 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
PCDHGA1Q9Y5H4 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC26.03■■□□□ 1.76
PCDHGA1Q9Y5H4 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
PCDHGA1Q9Y5H4 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC26.02■■□□□ 1.76
PCDHGA1Q9Y5H4 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
PCDHGA1Q9Y5H4 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
PCDHGA1Q9Y5H4 HSD17B1P1-201ENST00000590052 955 ntBASIC26.01■■□□□ 1.75
PCDHGA1Q9Y5H4 DUX4L11-201ENST00000611504 1267 ntBASIC26.01■■□□□ 1.75
PCDHGA1Q9Y5H4 DUX4L12-201ENST00000614593 1267 ntBASIC26.01■■□□□ 1.75
PCDHGA1Q9Y5H4 DUX4L14-201ENST00000621227 1267 ntBASIC26.01■■□□□ 1.75
PCDHGA1Q9Y5H4 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26■■□□□ 1.75
PCDHGA1Q9Y5H4 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26■■□□□ 1.75
PCDHGA1Q9Y5H4 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC26■■□□□ 1.75
PCDHGA1Q9Y5H4 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
PCDHGA1Q9Y5H4 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
PCDHGA1Q9Y5H4 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
PCDHGA1Q9Y5H4 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC25.98■■□□□ 1.75
PCDHGA1Q9Y5H4 CR559946.2-201ENST00000623684 991 ntBASIC25.97■■□□□ 1.75
PCDHGA1Q9Y5H4 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
PCDHGA1Q9Y5H4 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
PCDHGA1Q9Y5H4 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
PCDHGA1Q9Y5H4 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC25.96■■□□□ 1.75
PCDHGA1Q9Y5H4 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC25.96■■□□□ 1.75
PCDHGA1Q9Y5H4 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC25.96■■□□□ 1.75
PCDHGA1Q9Y5H4 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC25.96■■□□□ 1.75
PCDHGA1Q9Y5H4 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
PCDHGA1Q9Y5H4 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
PCDHGA1Q9Y5H4 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC25.94■■□□□ 1.74
PCDHGA1Q9Y5H4 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
PCDHGA1Q9Y5H4 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC25.93■■□□□ 1.74
PCDHGA1Q9Y5H4 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
PCDHGA1Q9Y5H4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.9■■□□□ 1.74
PCDHGA1Q9Y5H4 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
PCDHGA1Q9Y5H4 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
PCDHGA1Q9Y5H4 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
PCDHGA1Q9Y5H4 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC25.89■■□□□ 1.74
PCDHGA1Q9Y5H4 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC25.89■■□□□ 1.74
PCDHGA1Q9Y5H4 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
PCDHGA1Q9Y5H4 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
PCDHGA1Q9Y5H4 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
PCDHGA1Q9Y5H4 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
PCDHGA1Q9Y5H4 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
PCDHGA1Q9Y5H4 BRD4-212ENST00000630599 726 ntTSL 2 BASIC25.88■■□□□ 1.73
PCDHGA1Q9Y5H4 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC25.87■■□□□ 1.73
PCDHGA1Q9Y5H4 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
PCDHGA1Q9Y5H4 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC25.86■■□□□ 1.73
PCDHGA1Q9Y5H4 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC25.86■■□□□ 1.73
PCDHGA1Q9Y5H4 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHGA1Q9Y5H4 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHGA1Q9Y5H4 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHGA1Q9Y5H4 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
PCDHGA1Q9Y5H4 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
PCDHGA1Q9Y5H4 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC25.83■■□□□ 1.72
PCDHGA1Q9Y5H4 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
PCDHGA1Q9Y5H4 ABHD17AP3-201ENST00000503096 1137 ntBASIC25.82■■□□□ 1.72
PCDHGA1Q9Y5H4 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC25.82■■□□□ 1.72
PCDHGA1Q9Y5H4 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.82■■□□□ 1.72
PCDHGA1Q9Y5H4 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC25.82■■□□□ 1.72
PCDHGA1Q9Y5H4 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHGA1Q9Y5H4 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
PCDHGA1Q9Y5H4 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
PCDHGA1Q9Y5H4 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC25.77■■□□□ 1.72
PCDHGA1Q9Y5H4 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
PCDHGA1Q9Y5H4 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
PCDHGA1Q9Y5H4 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC25.76■■□□□ 1.71
PCDHGA1Q9Y5H4 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PCDHGA1Q9Y5H4 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
PCDHGA1Q9Y5H4 DUX4L13-201ENST00000554103 1267 ntBASIC25.74■■□□□ 1.71
PCDHGA1Q9Y5H4 DUX4L15-201ENST00000611059 1267 ntBASIC25.74■■□□□ 1.71
PCDHGA1Q9Y5H4 DUX4L23-201ENST00000615195 1269 ntBASIC25.74■■□□□ 1.71
PCDHGA1Q9Y5H4 DUX4L24-201ENST00000617576 1269 ntBASIC25.74■■□□□ 1.71
PCDHGA1Q9Y5H4 DUX4L22-201ENST00000618238 1269 ntBASIC25.74■■□□□ 1.71
PCDHGA1Q9Y5H4 DUX4L20-201ENST00000619712 1269 ntBASIC25.74■■□□□ 1.71
PCDHGA1Q9Y5H4 DUX4L21-201ENST00000622058 1269 ntBASIC25.74■■□□□ 1.71
PCDHGA1Q9Y5H4 DUX4L10-201ENST00000622460 1267 ntBASIC25.74■■□□□ 1.71
PCDHGA1Q9Y5H4 DUX4L25-201ENST00000624915 1269 ntBASIC25.74■■□□□ 1.71
PCDHGA1Q9Y5H4 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHGA1Q9Y5H4 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHGA1Q9Y5H4 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHGA1Q9Y5H4 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHGA1Q9Y5H4 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHGA1Q9Y5H4 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHGA1Q9Y5H4 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC25.71■■□□□ 1.71
PCDHGA1Q9Y5H4 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.71
PCDHGA1Q9Y5H4 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC25.7■■□□□ 1.7
PCDHGA1Q9Y5H4 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC25.69■■□□□ 1.7
PCDHGA1Q9Y5H4 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC25.69■■□□□ 1.7
PCDHGA1Q9Y5H4 METRNL-202ENST00000570778 967 ntTSL 5 BASIC25.69■■□□□ 1.7
PCDHGA1Q9Y5H4 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PCDHGA1Q9Y5H4 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PCDHGA1Q9Y5H4 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
PCDHGA1Q9Y5H4 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
PCDHGA1Q9Y5H4 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC25.67■■□□□ 1.7
PCDHGA1Q9Y5H4 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms