Protein–RNA interactions for Protein: Q9Y5G4

PCDHGA9, Protocadherin gamma-A9, humanhuman

Known RBP Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9Q9Y5G4 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PCDHGA9Q9Y5G4 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PCDHGA9Q9Y5G4 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHGA9Q9Y5G4 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHGA9Q9Y5G4 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHGA9Q9Y5G4 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHGA9Q9Y5G4 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHGA9Q9Y5G4 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHGA9Q9Y5G4 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHGA9Q9Y5G4 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC24.95■■□□□ 1.59
PCDHGA9Q9Y5G4 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
PCDHGA9Q9Y5G4 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PCDHGA9Q9Y5G4 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
PCDHGA9Q9Y5G4 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PCDHGA9Q9Y5G4 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC24.94■■□□□ 1.58
PCDHGA9Q9Y5G4 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHGA9Q9Y5G4 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHGA9Q9Y5G4 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
PCDHGA9Q9Y5G4 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
PCDHGA9Q9Y5G4 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC24.91■■□□□ 1.58
PCDHGA9Q9Y5G4 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.9■■□□□ 1.58
PCDHGA9Q9Y5G4 CIB2-204ENST00000557846 934 ntTSL 3 BASIC24.9■■□□□ 1.58
PCDHGA9Q9Y5G4 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC24.9■■□□□ 1.58
PCDHGA9Q9Y5G4 AC021231.2-201ENST00000594613 730 ntBASIC24.9■■□□□ 1.58
PCDHGA9Q9Y5G4 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
PCDHGA9Q9Y5G4 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
PCDHGA9Q9Y5G4 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
PCDHGA9Q9Y5G4 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
PCDHGA9Q9Y5G4 AC108673.1-201ENST00000510422 1159 ntBASIC24.88■■□□□ 1.57
PCDHGA9Q9Y5G4 MIR4449-201ENST00000578365 66 ntBASIC24.87■■□□□ 1.57
PCDHGA9Q9Y5G4 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC24.87■■□□□ 1.57
PCDHGA9Q9Y5G4 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC24.87■■□□□ 1.57
PCDHGA9Q9Y5G4 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC24.86■■□□□ 1.57
PCDHGA9Q9Y5G4 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
PCDHGA9Q9Y5G4 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHGA9Q9Y5G4 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PCDHGA9Q9Y5G4 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC24.85■■□□□ 1.57
PCDHGA9Q9Y5G4 MIR639-201ENST00000384974 98 ntBASIC24.84■■□□□ 1.57
PCDHGA9Q9Y5G4 RPS2-202ENST00000526522 924 ntTSL 2 BASIC24.84■■□□□ 1.57
PCDHGA9Q9Y5G4 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.84■■□□□ 1.57
PCDHGA9Q9Y5G4 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHGA9Q9Y5G4 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHGA9Q9Y5G4 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC24.84■■□□□ 1.57
PCDHGA9Q9Y5G4 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC24.83■■□□□ 1.57
PCDHGA9Q9Y5G4 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC24.83■■□□□ 1.57
PCDHGA9Q9Y5G4 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
PCDHGA9Q9Y5G4 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHGA9Q9Y5G4 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
PCDHGA9Q9Y5G4 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHGA9Q9Y5G4 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
PCDHGA9Q9Y5G4 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHGA9Q9Y5G4 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHGA9Q9Y5G4 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHGA9Q9Y5G4 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC24.8■■□□□ 1.56
PCDHGA9Q9Y5G4 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHGA9Q9Y5G4 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHGA9Q9Y5G4 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
PCDHGA9Q9Y5G4 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHGA9Q9Y5G4 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHGA9Q9Y5G4 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC24.79■■□□□ 1.56
PCDHGA9Q9Y5G4 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC24.79■■□□□ 1.56
PCDHGA9Q9Y5G4 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC24.79■■□□□ 1.56
PCDHGA9Q9Y5G4 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC24.78■■□□□ 1.56
PCDHGA9Q9Y5G4 MIR6090-201ENST00000622481 60 ntBASIC24.78■■□□□ 1.56
PCDHGA9Q9Y5G4 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC24.77■■□□□ 1.56
PCDHGA9Q9Y5G4 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHGA9Q9Y5G4 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHGA9Q9Y5G4 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC24.75■■□□□ 1.55
PCDHGA9Q9Y5G4 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.75■■□□□ 1.55
PCDHGA9Q9Y5G4 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHGA9Q9Y5G4 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHGA9Q9Y5G4 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHGA9Q9Y5G4 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PCDHGA9Q9Y5G4 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.73■■□□□ 1.55
PCDHGA9Q9Y5G4 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24.73■■□□□ 1.55
PCDHGA9Q9Y5G4 MIR3648-2-201ENST00000581792 180 ntBASIC24.73■■□□□ 1.55
PCDHGA9Q9Y5G4 MIR3648-1-201ENST00000615959 180 ntBASIC24.73■■□□□ 1.55
PCDHGA9Q9Y5G4 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHGA9Q9Y5G4 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHGA9Q9Y5G4 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.72■■□□□ 1.55
PCDHGA9Q9Y5G4 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.71■■□□□ 1.55
PCDHGA9Q9Y5G4 LINC01971-201ENST00000617888 1048 ntBASIC24.71■■□□□ 1.55
PCDHGA9Q9Y5G4 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.71■■□□□ 1.55
PCDHGA9Q9Y5G4 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.7■■□□□ 1.54
PCDHGA9Q9Y5G4 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC24.7■■□□□ 1.54
PCDHGA9Q9Y5G4 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHGA9Q9Y5G4 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHGA9Q9Y5G4 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC24.69■■□□□ 1.54
PCDHGA9Q9Y5G4 AC016575.1-201ENST00000607026 382 ntBASIC24.69■■□□□ 1.54
PCDHGA9Q9Y5G4 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
PCDHGA9Q9Y5G4 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHGA9Q9Y5G4 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.68■■□□□ 1.54
PCDHGA9Q9Y5G4 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.68■■□□□ 1.54
PCDHGA9Q9Y5G4 CALM3-209ENST00000597743 577 ntTSL 4 BASIC24.68■■□□□ 1.54
PCDHGA9Q9Y5G4 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHGA9Q9Y5G4 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHGA9Q9Y5G4 DUX4L11-201ENST00000611504 1267 ntBASIC24.67■■□□□ 1.54
PCDHGA9Q9Y5G4 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHGA9Q9Y5G4 DUX4L12-201ENST00000614593 1267 ntBASIC24.67■■□□□ 1.54
PCDHGA9Q9Y5G4 DUX4L14-201ENST00000621227 1267 ntBASIC24.67■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms