Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
FOXA2Q9Y261 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
FOXA2Q9Y261 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXA2Q9Y261 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
FOXA2Q9Y261 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
FOXA2Q9Y261 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.51■■□□□ 1.03
FOXA2Q9Y261 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXA2Q9Y261 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
FOXA2Q9Y261 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXA2Q9Y261 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXA2Q9Y261 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
FOXA2Q9Y261 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
FOXA2Q9Y261 AL133380.1-201ENST00000506013 324 ntBASIC21.49■■□□□ 1.03
FOXA2Q9Y261 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXA2Q9Y261 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXA2Q9Y261 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXA2Q9Y261 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXA2Q9Y261 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXA2Q9Y261 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXA2Q9Y261 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
FOXA2Q9Y261 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
FOXA2Q9Y261 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
FOXA2Q9Y261 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
FOXA2Q9Y261 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
FOXA2Q9Y261 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
FOXA2Q9Y261 AC097358.2-201ENST00000607541 1159 ntBASIC21.43■■□□□ 1.02
FOXA2Q9Y261 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
FOXA2Q9Y261 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
FOXA2Q9Y261 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
FOXA2Q9Y261 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
FOXA2Q9Y261 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
FOXA2Q9Y261 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC21.41■■□□□ 1.02
FOXA2Q9Y261 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXA2Q9Y261 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
FOXA2Q9Y261 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
FOXA2Q9Y261 AC139426.1-201ENST00000568218 2529 ntBASIC21.39■■□□□ 1.02
FOXA2Q9Y261 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.39■■□□□ 1.01
FOXA2Q9Y261 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.38■■□□□ 1.01
FOXA2Q9Y261 AL135925.1-201ENST00000605920 1701 ntBASIC21.38■■□□□ 1.01
FOXA2Q9Y261 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXA2Q9Y261 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.38■■□□□ 1.01
FOXA2Q9Y261 AC136428.2-201ENST00000563187 214 ntBASIC21.38■■□□□ 1.01
FOXA2Q9Y261 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
FOXA2Q9Y261 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
FOXA2Q9Y261 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXA2Q9Y261 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXA2Q9Y261 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC21.36■■□□□ 1.01
FOXA2Q9Y261 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.36■■□□□ 1.01
FOXA2Q9Y261 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXA2Q9Y261 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXA2Q9Y261 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
FOXA2Q9Y261 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
FOXA2Q9Y261 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
FOXA2Q9Y261 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXA2Q9Y261 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
FOXA2Q9Y261 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
FOXA2Q9Y261 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
FOXA2Q9Y261 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
FOXA2Q9Y261 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
FOXA2Q9Y261 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.33■■□□□ 1
FOXA2Q9Y261 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.33■■□□□ 1
FOXA2Q9Y261 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
FOXA2Q9Y261 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
FOXA2Q9Y261 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.31■■□□□ 1
FOXA2Q9Y261 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.31■■□□□ 1
FOXA2Q9Y261 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC21.31■■□□□ 1
FOXA2Q9Y261 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
FOXA2Q9Y261 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXA2Q9Y261 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC21.3■■□□□ 1
FOXA2Q9Y261 WASH5P-204ENST00000632292 975 ntBASIC21.3■■□□□ 1
FOXA2Q9Y261 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.29■■□□□ 1
FOXA2Q9Y261 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC21.29■■□□□ 1
FOXA2Q9Y261 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXA2Q9Y261 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.28■■□□□ 1
FOXA2Q9Y261 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
FOXA2Q9Y261 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.27■■□□□ 1
FOXA2Q9Y261 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
FOXA2Q9Y261 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXA2Q9Y261 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXA2Q9Y261 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC21.26■□□□□ 0.99
FOXA2Q9Y261 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXA2Q9Y261 AL391121.1-201ENST00000607967 1349 ntBASIC21.26■□□□□ 0.99
FOXA2Q9Y261 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
FOXA2Q9Y261 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
FOXA2Q9Y261 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.25■□□□□ 0.99
FOXA2Q9Y261 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
FOXA2Q9Y261 CAHM-201ENST00000604200 896 ntBASIC21.23■□□□□ 0.99
FOXA2Q9Y261 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
FOXA2Q9Y261 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
FOXA2Q9Y261 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
FOXA2Q9Y261 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
FOXA2Q9Y261 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC21.22■□□□□ 0.99
FOXA2Q9Y261 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.22■□□□□ 0.99
FOXA2Q9Y261 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.22■□□□□ 0.99
FOXA2Q9Y261 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA2Q9Y261 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.21■□□□□ 0.99
FOXA2Q9Y261 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.21■□□□□ 0.99
FOXA2Q9Y261 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA2Q9Y261 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA2Q9Y261 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms