Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC28.87■■■□□ 2.21
VPS52Q8N1B4 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
VPS52Q8N1B4 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC28.84■■■□□ 2.21
VPS52Q8N1B4 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC28.84■■■□□ 2.21
VPS52Q8N1B4 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC28.84■■■□□ 2.21
VPS52Q8N1B4 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC28.84■■■□□ 2.21
VPS52Q8N1B4 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC28.83■■■□□ 2.21
VPS52Q8N1B4 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
VPS52Q8N1B4 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC28.82■■■□□ 2.2
VPS52Q8N1B4 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC28.82■■■□□ 2.2
VPS52Q8N1B4 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
VPS52Q8N1B4 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC28.81■■■□□ 2.2
VPS52Q8N1B4 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
VPS52Q8N1B4 AC021231.2-201ENST00000594613 730 ntBASIC28.8■■■□□ 2.2
VPS52Q8N1B4 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC28.8■■■□□ 2.2
VPS52Q8N1B4 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC28.79■■■□□ 2.2
VPS52Q8N1B4 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC28.79■■■□□ 2.2
VPS52Q8N1B4 CIB2-204ENST00000557846 934 ntTSL 3 BASIC28.79■■■□□ 2.2
VPS52Q8N1B4 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC28.79■■■□□ 2.2
VPS52Q8N1B4 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
VPS52Q8N1B4 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
VPS52Q8N1B4 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
VPS52Q8N1B4 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC28.77■■■□□ 2.2
VPS52Q8N1B4 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
VPS52Q8N1B4 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC28.77■■■□□ 2.2
VPS52Q8N1B4 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC28.77■■■□□ 2.2
VPS52Q8N1B4 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
VPS52Q8N1B4 ST7-205ENST00000393446 2114 ntTSL 5 BASIC28.76■■■□□ 2.19
VPS52Q8N1B4 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC28.75■■■□□ 2.19
VPS52Q8N1B4 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
VPS52Q8N1B4 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC28.74■■■□□ 2.19
VPS52Q8N1B4 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
VPS52Q8N1B4 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
VPS52Q8N1B4 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
VPS52Q8N1B4 AC108673.1-201ENST00000510422 1159 ntBASIC28.73■■■□□ 2.19
VPS52Q8N1B4 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
VPS52Q8N1B4 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
VPS52Q8N1B4 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC28.73■■■□□ 2.19
VPS52Q8N1B4 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
VPS52Q8N1B4 MIR6090-201ENST00000622481 60 ntBASIC28.72■■■□□ 2.19
VPS52Q8N1B4 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
VPS52Q8N1B4 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC28.72■■■□□ 2.19
VPS52Q8N1B4 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS52Q8N1B4 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS52Q8N1B4 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC28.71■■■□□ 2.19
VPS52Q8N1B4 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
VPS52Q8N1B4 ST7-202ENST00000323984 2142 ntTSL 5 BASIC28.69■■■□□ 2.18
VPS52Q8N1B4 ST7-207ENST00000393449 2127 ntTSL 5 BASIC28.69■■■□□ 2.18
VPS52Q8N1B4 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
VPS52Q8N1B4 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
VPS52Q8N1B4 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
VPS52Q8N1B4 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
VPS52Q8N1B4 RPS2-202ENST00000526522 924 ntTSL 2 BASIC28.68■■■□□ 2.18
VPS52Q8N1B4 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
VPS52Q8N1B4 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC28.67■■■□□ 2.18
VPS52Q8N1B4 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC28.66■■■□□ 2.18
VPS52Q8N1B4 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
VPS52Q8N1B4 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
VPS52Q8N1B4 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
VPS52Q8N1B4 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
VPS52Q8N1B4 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
VPS52Q8N1B4 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
VPS52Q8N1B4 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC28.64■■■□□ 2.18
VPS52Q8N1B4 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC28.64■■■□□ 2.18
VPS52Q8N1B4 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
VPS52Q8N1B4 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC28.63■■■□□ 2.17
VPS52Q8N1B4 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC28.63■■■□□ 2.17
VPS52Q8N1B4 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC28.63■■■□□ 2.17
VPS52Q8N1B4 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC28.62■■■□□ 2.17
VPS52Q8N1B4 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
VPS52Q8N1B4 MACF1-219ENST00000484793 834 ntTSL 2 BASIC28.6■■■□□ 2.17
VPS52Q8N1B4 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC28.6■■■□□ 2.17
VPS52Q8N1B4 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
VPS52Q8N1B4 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
VPS52Q8N1B4 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC28.56■■■□□ 2.16
VPS52Q8N1B4 MIR639-201ENST00000384974 98 ntBASIC28.56■■■□□ 2.16
VPS52Q8N1B4 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC28.56■■■□□ 2.16
VPS52Q8N1B4 RNF166-209ENST00000567844 633 ntTSL 5 BASIC28.56■■■□□ 2.16
VPS52Q8N1B4 MIR4449-201ENST00000578365 66 ntBASIC28.56■■■□□ 2.16
VPS52Q8N1B4 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
VPS52Q8N1B4 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
VPS52Q8N1B4 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC28.55■■■□□ 2.16
VPS52Q8N1B4 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC28.55■■■□□ 2.16
VPS52Q8N1B4 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
VPS52Q8N1B4 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC28.53■■■□□ 2.16
VPS52Q8N1B4 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
VPS52Q8N1B4 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC28.52■■■□□ 2.16
VPS52Q8N1B4 MIR3648-2-201ENST00000581792 180 ntBASIC28.52■■■□□ 2.16
VPS52Q8N1B4 MIR3648-1-201ENST00000615959 180 ntBASIC28.52■■■□□ 2.16
VPS52Q8N1B4 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC28.51■■■□□ 2.15
VPS52Q8N1B4 AC016575.1-201ENST00000607026 382 ntBASIC28.51■■■□□ 2.15
VPS52Q8N1B4 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
VPS52Q8N1B4 GDI1-215ENST00000630693 786 ntTSL 4 BASIC28.5■■■□□ 2.15
VPS52Q8N1B4 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC28.49■■■□□ 2.15
VPS52Q8N1B4 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
VPS52Q8N1B4 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
VPS52Q8N1B4 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC28.48■■■□□ 2.15
VPS52Q8N1B4 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
VPS52Q8N1B4 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC28.48■■■□□ 2.15
VPS52Q8N1B4 DUX4L11-201ENST00000611504 1267 ntBASIC28.48■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms