Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC17.22■□□□□ 0.35
HSPG2P98160 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HSPG2P98160 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC17.21■□□□□ 0.35
HSPG2P98160 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HSPG2P98160 DUX4L13-201ENST00000554103 1267 ntBASIC17.21■□□□□ 0.35
HSPG2P98160 DUX4L15-201ENST00000611059 1267 ntBASIC17.21■□□□□ 0.35
HSPG2P98160 DUX4L23-201ENST00000615195 1269 ntBASIC17.21■□□□□ 0.35
HSPG2P98160 DUX4L24-201ENST00000617576 1269 ntBASIC17.21■□□□□ 0.35
HSPG2P98160 DUX4L22-201ENST00000618238 1269 ntBASIC17.21■□□□□ 0.35
HSPG2P98160 DUX4L20-201ENST00000619712 1269 ntBASIC17.21■□□□□ 0.35
HSPG2P98160 DUX4L21-201ENST00000622058 1269 ntBASIC17.21■□□□□ 0.35
HSPG2P98160 DUX4L10-201ENST00000622460 1267 ntBASIC17.21■□□□□ 0.35
HSPG2P98160 DUX4L25-201ENST00000624915 1269 ntBASIC17.21■□□□□ 0.35
HSPG2P98160 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
HSPG2P98160 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC17.21■□□□□ 0.34
HSPG2P98160 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HSPG2P98160 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
HSPG2P98160 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HSPG2P98160 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC17.19■□□□□ 0.34
HSPG2P98160 SRP68-213ENST00000629930 165 ntTSL 5 BASIC17.19■□□□□ 0.34
HSPG2P98160 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HSPG2P98160 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HSPG2P98160 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC17.18■□□□□ 0.34
HSPG2P98160 METRNL-202ENST00000570778 967 ntTSL 5 BASIC17.18■□□□□ 0.34
HSPG2P98160 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HSPG2P98160 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HSPG2P98160 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC17.18■□□□□ 0.34
HSPG2P98160 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HSPG2P98160 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HSPG2P98160 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HSPG2P98160 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HSPG2P98160 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HSPG2P98160 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HSPG2P98160 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HSPG2P98160 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HSPG2P98160 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HSPG2P98160 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
HSPG2P98160 CIB2-204ENST00000557846 934 ntTSL 3 BASIC17.15■□□□□ 0.34
HSPG2P98160 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HSPG2P98160 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC17.12■□□□□ 0.33
HSPG2P98160 RNF126P1-201ENST00000567452 1320 ntBASIC17.12■□□□□ 0.33
HSPG2P98160 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HSPG2P98160 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC17.12■□□□□ 0.33
HSPG2P98160 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HSPG2P98160 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC17.11■□□□□ 0.33
HSPG2P98160 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HSPG2P98160 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HSPG2P98160 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC17.1■□□□□ 0.33
HSPG2P98160 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HSPG2P98160 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HSPG2P98160 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HSPG2P98160 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HSPG2P98160 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HSPG2P98160 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC17.09■□□□□ 0.33
HSPG2P98160 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HSPG2P98160 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HSPG2P98160 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HSPG2P98160 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HSPG2P98160 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HSPG2P98160 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HSPG2P98160 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC17.07■□□□□ 0.32
HSPG2P98160 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HSPG2P98160 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HSPG2P98160 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HSPG2P98160 HES6-205ENST00000409356 528 ntTSL 2 BASIC17.05■□□□□ 0.32
HSPG2P98160 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC17.05■□□□□ 0.32
HSPG2P98160 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC17.05■□□□□ 0.32
HSPG2P98160 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HSPG2P98160 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HSPG2P98160 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HSPG2P98160 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HSPG2P98160 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC17.03■□□□□ 0.32
HSPG2P98160 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HSPG2P98160 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HSPG2P98160 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HSPG2P98160 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HSPG2P98160 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HSPG2P98160 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HSPG2P98160 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC17.03■□□□□ 0.32
HSPG2P98160 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
HSPG2P98160 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HSPG2P98160 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
HSPG2P98160 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HSPG2P98160 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HSPG2P98160 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
HSPG2P98160 GPX1-201ENST00000419349 1106 ntBASIC17■□□□□ 0.31
HSPG2P98160 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HSPG2P98160 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HSPG2P98160 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
HSPG2P98160 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC17■□□□□ 0.31
HSPG2P98160 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC17■□□□□ 0.31
HSPG2P98160 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HSPG2P98160 NTF6A-201ENST00000591175 560 ntBASIC16.98■□□□□ 0.31
HSPG2P98160 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HSPG2P98160 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HSPG2P98160 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC16.98■□□□□ 0.31
HSPG2P98160 AC108673.1-201ENST00000510422 1159 ntBASIC16.97■□□□□ 0.31
HSPG2P98160 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC16.97■□□□□ 0.31
HSPG2P98160 AC018358.1-201ENST00000631079 1402 ntBASIC16.96■□□□□ 0.31
HSPG2P98160 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms