Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC32.7■■■□□ 2.82
COL1A1P02452 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC32.69■■■□□ 2.82
COL1A1P02452 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
COL1A1P02452 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
COL1A1P02452 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
COL1A1P02452 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
COL1A1P02452 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC32.68■■■□□ 2.82
COL1A1P02452 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
COL1A1P02452 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
COL1A1P02452 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
COL1A1P02452 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC32.67■■■□□ 2.82
COL1A1P02452 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
COL1A1P02452 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
COL1A1P02452 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC32.67■■■□□ 2.82
COL1A1P02452 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC32.66■■■□□ 2.82
COL1A1P02452 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC32.65■■■□□ 2.82
COL1A1P02452 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC32.65■■■□□ 2.82
COL1A1P02452 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC32.65■■■□□ 2.82
COL1A1P02452 HGH1-207ENST00000628266 258 ntTSL 5 BASIC32.65■■■□□ 2.82
COL1A1P02452 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
COL1A1P02452 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
COL1A1P02452 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
COL1A1P02452 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
COL1A1P02452 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC32.6■■■□□ 2.81
COL1A1P02452 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
COL1A1P02452 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
COL1A1P02452 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC32.57■■■□□ 2.8
COL1A1P02452 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
COL1A1P02452 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
COL1A1P02452 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC32.56■■■□□ 2.8
COL1A1P02452 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
COL1A1P02452 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC32.56■■■□□ 2.8
COL1A1P02452 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC32.55■■■□□ 2.8
COL1A1P02452 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC32.54■■■□□ 2.8
COL1A1P02452 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC32.54■■■□□ 2.8
COL1A1P02452 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
COL1A1P02452 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
COL1A1P02452 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC32.51■■■□□ 2.79
COL1A1P02452 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
COL1A1P02452 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
COL1A1P02452 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
COL1A1P02452 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC32.48■■■□□ 2.79
COL1A1P02452 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC32.48■■■□□ 2.79
COL1A1P02452 MIR6090-201ENST00000622481 60 ntBASIC32.48■■■□□ 2.79
COL1A1P02452 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC32.46■■■□□ 2.79
COL1A1P02452 DUX4L29-201ENST00000425409 679 ntBASIC32.46■■■□□ 2.79
COL1A1P02452 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
COL1A1P02452 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC32.44■■■□□ 2.78
COL1A1P02452 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
COL1A1P02452 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC32.43■■■□□ 2.78
COL1A1P02452 MACF1-219ENST00000484793 834 ntTSL 2 BASIC32.42■■■□□ 2.78
COL1A1P02452 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
COL1A1P02452 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC32.41■■■□□ 2.78
COL1A1P02452 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
COL1A1P02452 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
COL1A1P02452 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC32.4■■■□□ 2.78
COL1A1P02452 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
COL1A1P02452 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
COL1A1P02452 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
COL1A1P02452 RPS2-202ENST00000526522 924 ntTSL 2 BASIC32.39■■■□□ 2.78
COL1A1P02452 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC32.38■■■□□ 2.77
COL1A1P02452 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC32.38■■■□□ 2.77
COL1A1P02452 MIR4449-201ENST00000578365 66 ntBASIC32.38■■■□□ 2.77
COL1A1P02452 AL161658.1-201ENST00000623641 1967 ntBASIC32.38■■■□□ 2.77
COL1A1P02452 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
COL1A1P02452 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
COL1A1P02452 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC32.37■■■□□ 2.77
COL1A1P02452 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC32.36■■■□□ 2.77
COL1A1P02452 AC021231.2-201ENST00000594613 730 ntBASIC32.36■■■□□ 2.77
COL1A1P02452 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
COL1A1P02452 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
COL1A1P02452 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
COL1A1P02452 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC32.34■■■□□ 2.77
COL1A1P02452 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
COL1A1P02452 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC32.34■■■□□ 2.77
COL1A1P02452 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
COL1A1P02452 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC32.33■■■□□ 2.77
COL1A1P02452 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
COL1A1P02452 AC108673.1-201ENST00000510422 1159 ntBASIC32.32■■■□□ 2.76
COL1A1P02452 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
COL1A1P02452 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
COL1A1P02452 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC32.31■■■□□ 2.76
COL1A1P02452 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
COL1A1P02452 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC32.3■■■□□ 2.76
COL1A1P02452 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC32.3■■■□□ 2.76
COL1A1P02452 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC32.3■■■□□ 2.76
COL1A1P02452 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
COL1A1P02452 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL1A1P02452 MIR639-201ENST00000384974 98 ntBASIC32.29■■■□□ 2.76
COL1A1P02452 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC32.29■■■□□ 2.76
COL1A1P02452 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL1A1P02452 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL1A1P02452 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC32.28■■■□□ 2.76
COL1A1P02452 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC32.28■■■□□ 2.76
COL1A1P02452 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC32.27■■■□□ 2.76
COL1A1P02452 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
COL1A1P02452 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC32.26■■■□□ 2.75
COL1A1P02452 CIB2-204ENST00000557846 934 ntTSL 3 BASIC32.26■■■□□ 2.75
COL1A1P02452 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
COL1A1P02452 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 9.1 ms