Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
TRIM13O60858 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC26.24■■□□□ 1.79
TRIM13O60858 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC26.24■■□□□ 1.79
TRIM13O60858 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
TRIM13O60858 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
TRIM13O60858 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
TRIM13O60858 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
TRIM13O60858 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
TRIM13O60858 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC26.21■■□□□ 1.79
TRIM13O60858 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
TRIM13O60858 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
TRIM13O60858 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC26.2■■□□□ 1.78
TRIM13O60858 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC26.19■■□□□ 1.78
TRIM13O60858 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
TRIM13O60858 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
TRIM13O60858 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
TRIM13O60858 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
TRIM13O60858 AP002365.1-201ENST00000603448 772 ntBASIC26.17■■□□□ 1.78
TRIM13O60858 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC26.16■■□□□ 1.78
TRIM13O60858 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC26.16■■□□□ 1.78
TRIM13O60858 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
TRIM13O60858 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
TRIM13O60858 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC26.14■■□□□ 1.78
TRIM13O60858 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
TRIM13O60858 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
TRIM13O60858 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC26.12■■□□□ 1.77
TRIM13O60858 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
TRIM13O60858 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC26.11■■□□□ 1.77
TRIM13O60858 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
TRIM13O60858 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
TRIM13O60858 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
TRIM13O60858 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
TRIM13O60858 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
TRIM13O60858 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
TRIM13O60858 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.77
TRIM13O60858 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
TRIM13O60858 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
TRIM13O60858 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC26.07■■□□□ 1.76
TRIM13O60858 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC26.07■■□□□ 1.76
TRIM13O60858 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
TRIM13O60858 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TRIM13O60858 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TRIM13O60858 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TRIM13O60858 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
TRIM13O60858 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
TRIM13O60858 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
TRIM13O60858 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC26.03■■□□□ 1.76
TRIM13O60858 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.03■■□□□ 1.76
TRIM13O60858 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
TRIM13O60858 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
TRIM13O60858 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
TRIM13O60858 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
TRIM13O60858 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
TRIM13O60858 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26■■□□□ 1.75
TRIM13O60858 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC26■■□□□ 1.75
TRIM13O60858 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
TRIM13O60858 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC25.98■■□□□ 1.75
TRIM13O60858 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
TRIM13O60858 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
TRIM13O60858 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC25.97■■□□□ 1.75
TRIM13O60858 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.97■■□□□ 1.75
TRIM13O60858 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
TRIM13O60858 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC25.96■■□□□ 1.75
TRIM13O60858 WASH5P-204ENST00000632292 975 ntBASIC25.96■■□□□ 1.75
TRIM13O60858 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
TRIM13O60858 AC142086.6-201ENST00000621154 1765 ntBASIC25.96■■□□□ 1.75
TRIM13O60858 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
TRIM13O60858 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.95■■□□□ 1.75
TRIM13O60858 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.74
TRIM13O60858 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
TRIM13O60858 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
TRIM13O60858 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
TRIM13O60858 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.94■■□□□ 1.74
TRIM13O60858 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
TRIM13O60858 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC25.94■■□□□ 1.74
TRIM13O60858 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC25.93■■□□□ 1.74
TRIM13O60858 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC25.93■■□□□ 1.74
TRIM13O60858 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.93■■□□□ 1.74
TRIM13O60858 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
TRIM13O60858 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
TRIM13O60858 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC25.92■■□□□ 1.74
TRIM13O60858 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
TRIM13O60858 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
TRIM13O60858 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
TRIM13O60858 AL139393.2-201ENST00000608721 2025 ntBASIC25.91■■□□□ 1.74
TRIM13O60858 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC25.9■■□□□ 1.74
TRIM13O60858 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
TRIM13O60858 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC25.9■■□□□ 1.74
TRIM13O60858 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
TRIM13O60858 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
TRIM13O60858 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC25.87■■□□□ 1.73
TRIM13O60858 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
TRIM13O60858 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.87■■□□□ 1.73
TRIM13O60858 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.87■■□□□ 1.73
TRIM13O60858 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
TRIM13O60858 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
TRIM13O60858 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
TRIM13O60858 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.84■■□□□ 1.73
TRIM13O60858 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
TRIM13O60858 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC25.84■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms