Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMKR1H3BMG3 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMKR1H3BMG3 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMKR1H3BMG3 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMKR1H3BMG3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC19.43■□□□□ 0.7
SMKR1H3BMG3 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMKR1H3BMG3 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMKR1H3BMG3 AC142086.6-201ENST00000621154 1765 ntBASIC19.42■□□□□ 0.7
SMKR1H3BMG3 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC19.42■□□□□ 0.7
SMKR1H3BMG3 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMKR1H3BMG3 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMKR1H3BMG3 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMKR1H3BMG3 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC19.42■□□□□ 0.7
SMKR1H3BMG3 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMKR1H3BMG3 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC19.41■□□□□ 0.7
SMKR1H3BMG3 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SMKR1H3BMG3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMKR1H3BMG3 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMKR1H3BMG3 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC19.39■□□□□ 0.69
SMKR1H3BMG3 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC19.39■□□□□ 0.69
SMKR1H3BMG3 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMKR1H3BMG3 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMKR1H3BMG3 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMKR1H3BMG3 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMKR1H3BMG3 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMKR1H3BMG3 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SMKR1H3BMG3 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMKR1H3BMG3 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC19.37■□□□□ 0.69
SMKR1H3BMG3 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMKR1H3BMG3 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMKR1H3BMG3 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SMKR1H3BMG3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMKR1H3BMG3 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMKR1H3BMG3 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMKR1H3BMG3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMKR1H3BMG3 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC19.36■□□□□ 0.69
SMKR1H3BMG3 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMKR1H3BMG3 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMKR1H3BMG3 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMKR1H3BMG3 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMKR1H3BMG3 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMKR1H3BMG3 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMKR1H3BMG3 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMKR1H3BMG3 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMKR1H3BMG3 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMKR1H3BMG3 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMKR1H3BMG3 MVK-208ENST00000539696 608 ntTSL 5 BASIC19.33■□□□□ 0.68
SMKR1H3BMG3 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMKR1H3BMG3 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC19.32■□□□□ 0.68
SMKR1H3BMG3 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMKR1H3BMG3 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SMKR1H3BMG3 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC19.31■□□□□ 0.68
SMKR1H3BMG3 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SMKR1H3BMG3 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMKR1H3BMG3 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMKR1H3BMG3 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC19.3■□□□□ 0.68
SMKR1H3BMG3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMKR1H3BMG3 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMKR1H3BMG3 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SMKR1H3BMG3 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC19.27■□□□□ 0.67
SMKR1H3BMG3 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SMKR1H3BMG3 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
SMKR1H3BMG3 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMKR1H3BMG3 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC19.26■□□□□ 0.67
SMKR1H3BMG3 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SMKR1H3BMG3 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMKR1H3BMG3 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC19.25■□□□□ 0.67
SMKR1H3BMG3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SMKR1H3BMG3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMKR1H3BMG3 AL135925.1-201ENST00000605920 1701 ntBASIC19.25■□□□□ 0.67
SMKR1H3BMG3 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMKR1H3BMG3 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMKR1H3BMG3 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMKR1H3BMG3 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMKR1H3BMG3 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMKR1H3BMG3 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMKR1H3BMG3 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMKR1H3BMG3 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMKR1H3BMG3 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMKR1H3BMG3 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMKR1H3BMG3 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMKR1H3BMG3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMKR1H3BMG3 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SMKR1H3BMG3 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMKR1H3BMG3 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC19.19■□□□□ 0.66
SMKR1H3BMG3 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMKR1H3BMG3 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMKR1H3BMG3 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMKR1H3BMG3 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMKR1H3BMG3 AL121749.1-202ENST00000609313 2153 ntBASIC19.18■□□□□ 0.66
SMKR1H3BMG3 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMKR1H3BMG3 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMKR1H3BMG3 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMKR1H3BMG3 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
SMKR1H3BMG3 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMKR1H3BMG3 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMKR1H3BMG3 AC135731.1-201ENST00000569415 2548 ntBASIC19.15■□□□□ 0.66
SMKR1H3BMG3 DRD5P2-201ENST00000421395 2012 ntBASIC19.15■□□□□ 0.66
SMKR1H3BMG3 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMKR1H3BMG3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms