Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.96■■□□□ 1.11
LIMD1Q9UGP4 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.96■■□□□ 1.11
LIMD1Q9UGP4 AP003097.1-201ENST00000530657 1135 ntBASIC21.96■■□□□ 1.11
LIMD1Q9UGP4 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.96■■□□□ 1.11
LIMD1Q9UGP4 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LIMD1Q9UGP4 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.96■■□□□ 1.11
LIMD1Q9UGP4 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
LIMD1Q9UGP4 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
LIMD1Q9UGP4 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
LIMD1Q9UGP4 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
LIMD1Q9UGP4 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
LIMD1Q9UGP4 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
LIMD1Q9UGP4 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LIMD1Q9UGP4 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
LIMD1Q9UGP4 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.95■■□□□ 1.1
LIMD1Q9UGP4 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.95■■□□□ 1.1
LIMD1Q9UGP4 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.95■■□□□ 1.1
LIMD1Q9UGP4 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.95■■□□□ 1.1
LIMD1Q9UGP4 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LIMD1Q9UGP4 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.95■■□□□ 1.1
LIMD1Q9UGP4 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
LIMD1Q9UGP4 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
LIMD1Q9UGP4 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
LIMD1Q9UGP4 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
LIMD1Q9UGP4 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LIMD1Q9UGP4 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LIMD1Q9UGP4 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.94■■□□□ 1.1
LIMD1Q9UGP4 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.94■■□□□ 1.1
LIMD1Q9UGP4 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.94■■□□□ 1.1
LIMD1Q9UGP4 AL162412.1-201ENST00000567129 965 ntBASIC21.94■■□□□ 1.1
LIMD1Q9UGP4 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
LIMD1Q9UGP4 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
LIMD1Q9UGP4 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.94■■□□□ 1.1
LIMD1Q9UGP4 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LIMD1Q9UGP4 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.94■■□□□ 1.1
LIMD1Q9UGP4 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LIMD1Q9UGP4 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LIMD1Q9UGP4 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LIMD1Q9UGP4 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LIMD1Q9UGP4 POU5F1P4-201ENST00000413175 1085 ntBASIC21.93■■□□□ 1.1
LIMD1Q9UGP4 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.93■■□□□ 1.1
LIMD1Q9UGP4 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.93■■□□□ 1.1
LIMD1Q9UGP4 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.93■■□□□ 1.1
LIMD1Q9UGP4 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
LIMD1Q9UGP4 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
LIMD1Q9UGP4 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
LIMD1Q9UGP4 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.93■■□□□ 1.1
LIMD1Q9UGP4 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.92■■□□□ 1.1
LIMD1Q9UGP4 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
LIMD1Q9UGP4 RBM17P2-201ENST00000616397 1405 ntBASIC21.92■■□□□ 1.1
LIMD1Q9UGP4 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LIMD1Q9UGP4 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.92■■□□□ 1.1
LIMD1Q9UGP4 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
LIMD1Q9UGP4 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
LIMD1Q9UGP4 LSM12P1-201ENST00000411836 588 ntBASIC21.92■■□□□ 1.1
LIMD1Q9UGP4 UBE2SP1-201ENST00000450587 669 ntBASIC21.92■■□□□ 1.1
LIMD1Q9UGP4 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.92■■□□□ 1.1
LIMD1Q9UGP4 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.92■■□□□ 1.1
LIMD1Q9UGP4 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.92■■□□□ 1.1
LIMD1Q9UGP4 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.92■■□□□ 1.1
LIMD1Q9UGP4 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.92■■□□□ 1.1
LIMD1Q9UGP4 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.92■■□□□ 1.1
LIMD1Q9UGP4 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LIMD1Q9UGP4 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
LIMD1Q9UGP4 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LIMD1Q9UGP4 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
LIMD1Q9UGP4 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
LIMD1Q9UGP4 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.91■■□□□ 1.1
LIMD1Q9UGP4 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.91■■□□□ 1.1
LIMD1Q9UGP4 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LIMD1Q9UGP4 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LIMD1Q9UGP4 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 ANOS2P-203ENST00000472227 1816 ntBASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
LIMD1Q9UGP4 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.89■■□□□ 1.1
LIMD1Q9UGP4 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.89■■□□□ 1.1
LIMD1Q9UGP4 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
LIMD1Q9UGP4 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
LIMD1Q9UGP4 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
LIMD1Q9UGP4 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
LIMD1Q9UGP4 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
LIMD1Q9UGP4 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
LIMD1Q9UGP4 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.89■■□□□ 1.09
LIMD1Q9UGP4 AL359736.2-201ENST00000621992 437 ntBASIC21.89■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms