Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MKS1Q9NXB0 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.77■□□□□ 0.92
MKS1Q9NXB0 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
MKS1Q9NXB0 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
MKS1Q9NXB0 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
MKS1Q9NXB0 SYT6-210ENST00000641643 1587 ntBASIC20.77■□□□□ 0.92
MKS1Q9NXB0 AC020907.5-201ENST00000624372 1936 ntBASIC20.77■□□□□ 0.92
MKS1Q9NXB0 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MKS1Q9NXB0 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
MKS1Q9NXB0 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MKS1Q9NXB0 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MKS1Q9NXB0 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.77■□□□□ 0.92
MKS1Q9NXB0 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.77■□□□□ 0.92
MKS1Q9NXB0 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
MKS1Q9NXB0 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
MKS1Q9NXB0 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MKS1Q9NXB0 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
MKS1Q9NXB0 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.91
MKS1Q9NXB0 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
MKS1Q9NXB0 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
MKS1Q9NXB0 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.77■□□□□ 0.91
MKS1Q9NXB0 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.77■□□□□ 0.91
MKS1Q9NXB0 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 AC007225.1-201ENST00000566331 1836 ntBASIC20.76■□□□□ 0.91
MKS1Q9NXB0 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.76■□□□□ 0.91
MKS1Q9NXB0 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MKS1Q9NXB0 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MKS1Q9NXB0 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.75■□□□□ 0.91
MKS1Q9NXB0 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MKS1Q9NXB0 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
MKS1Q9NXB0 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MKS1Q9NXB0 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MKS1Q9NXB0 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
MKS1Q9NXB0 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
MKS1Q9NXB0 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MKS1Q9NXB0 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MKS1Q9NXB0 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.75■□□□□ 0.91
MKS1Q9NXB0 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MKS1Q9NXB0 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MKS1Q9NXB0 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MKS1Q9NXB0 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 GUSBP5-201ENST00000418136 578 ntBASIC20.74■□□□□ 0.91
MKS1Q9NXB0 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MKS1Q9NXB0 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.73■□□□□ 0.91
MKS1Q9NXB0 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MKS1Q9NXB0 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
MKS1Q9NXB0 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.73■□□□□ 0.91
MKS1Q9NXB0 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MKS1Q9NXB0 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MKS1Q9NXB0 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.73■□□□□ 0.91
MKS1Q9NXB0 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MKS1Q9NXB0 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
MKS1Q9NXB0 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.73■□□□□ 0.91
MKS1Q9NXB0 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
MKS1Q9NXB0 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.73■□□□□ 0.91
MKS1Q9NXB0 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.73■□□□□ 0.91
MKS1Q9NXB0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.72■□□□□ 0.91
MKS1Q9NXB0 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.72■□□□□ 0.91
MKS1Q9NXB0 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
MKS1Q9NXB0 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MKS1Q9NXB0 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MKS1Q9NXB0 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MKS1Q9NXB0 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.72■□□□□ 0.91
MKS1Q9NXB0 AC133561.4-201ENST00000566112 224 ntBASIC20.72■□□□□ 0.91
MKS1Q9NXB0 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MKS1Q9NXB0 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.72■□□□□ 0.91
MKS1Q9NXB0 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms