Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21■□□□□ 0.95
TREX1Q9NSU2 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21■□□□□ 0.95
TREX1Q9NSU2 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21■□□□□ 0.95
TREX1Q9NSU2 AC079140.4-201ENST00000507448 529 ntBASIC21■□□□□ 0.95
TREX1Q9NSU2 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21■□□□□ 0.95
TREX1Q9NSU2 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21■□□□□ 0.95
TREX1Q9NSU2 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
TREX1Q9NSU2 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
TREX1Q9NSU2 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21■□□□□ 0.95
TREX1Q9NSU2 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21■□□□□ 0.95
TREX1Q9NSU2 KRT87P-202ENST00000534226 1464 ntBASIC21■□□□□ 0.95
TREX1Q9NSU2 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TREX1Q9NSU2 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TREX1Q9NSU2 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TREX1Q9NSU2 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TREX1Q9NSU2 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.99■□□□□ 0.95
TREX1Q9NSU2 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TREX1Q9NSU2 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TREX1Q9NSU2 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TREX1Q9NSU2 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.99■□□□□ 0.95
TREX1Q9NSU2 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.99■□□□□ 0.95
TREX1Q9NSU2 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TREX1Q9NSU2 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TREX1Q9NSU2 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TREX1Q9NSU2 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TREX1Q9NSU2 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.98■□□□□ 0.95
TREX1Q9NSU2 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TREX1Q9NSU2 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.98■□□□□ 0.95
TREX1Q9NSU2 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
TREX1Q9NSU2 LINC02228-203ENST00000641970 1355 ntBASIC20.97■□□□□ 0.95
TREX1Q9NSU2 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TREX1Q9NSU2 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
TREX1Q9NSU2 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TREX1Q9NSU2 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TREX1Q9NSU2 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TREX1Q9NSU2 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TREX1Q9NSU2 AC123595.1-201ENST00000440769 1046 ntBASIC20.97■□□□□ 0.95
TREX1Q9NSU2 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.97■□□□□ 0.95
TREX1Q9NSU2 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TREX1Q9NSU2 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.97■□□□□ 0.95
TREX1Q9NSU2 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.97■□□□□ 0.95
TREX1Q9NSU2 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TREX1Q9NSU2 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
TREX1Q9NSU2 AC061975.6-201ENST00000579045 1553 ntBASIC20.97■□□□□ 0.95
TREX1Q9NSU2 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TREX1Q9NSU2 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TREX1Q9NSU2 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.97■□□□□ 0.95
TREX1Q9NSU2 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.96■□□□□ 0.95
TREX1Q9NSU2 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
TREX1Q9NSU2 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TREX1Q9NSU2 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.96■□□□□ 0.95
TREX1Q9NSU2 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TREX1Q9NSU2 ZNRF2P3-201ENST00000424200 374 ntBASIC20.96■□□□□ 0.95
TREX1Q9NSU2 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TREX1Q9NSU2 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TREX1Q9NSU2 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TREX1Q9NSU2 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.96■□□□□ 0.95
TREX1Q9NSU2 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TREX1Q9NSU2 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TREX1Q9NSU2 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TREX1Q9NSU2 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.96■□□□□ 0.95
TREX1Q9NSU2 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
TREX1Q9NSU2 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TREX1Q9NSU2 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
TREX1Q9NSU2 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TREX1Q9NSU2 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TREX1Q9NSU2 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TREX1Q9NSU2 TERF1P2-201ENST00000583350 1212 ntBASIC20.95■□□□□ 0.94
TREX1Q9NSU2 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TREX1Q9NSU2 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TREX1Q9NSU2 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TREX1Q9NSU2 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
TREX1Q9NSU2 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.95■□□□□ 0.94
TREX1Q9NSU2 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TREX1Q9NSU2 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TREX1Q9NSU2 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.95■□□□□ 0.94
TREX1Q9NSU2 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 YBX1P1-201ENST00000445822 960 ntBASIC20.94■□□□□ 0.94
TREX1Q9NSU2 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TREX1Q9NSU2 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.93■□□□□ 0.94
TREX1Q9NSU2 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
TREX1Q9NSU2 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TREX1Q9NSU2 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TREX1Q9NSU2 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms