Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 MIR6084-201ENST00000622012 110 ntBASIC21.7■■□□□ 1.06
PCDH9Q9HC56 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 BX005040.4-201ENST00000637145 1518 ntBASIC21.7■■□□□ 1.06
PCDH9Q9HC56 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCDH9Q9HC56 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDH9Q9HC56 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCDH9Q9HC56 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCDH9Q9HC56 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCDH9Q9HC56 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCDH9Q9HC56 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.69■■□□□ 1.06
PCDH9Q9HC56 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
PCDH9Q9HC56 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDH9Q9HC56 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.69■■□□□ 1.06
PCDH9Q9HC56 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDH9Q9HC56 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDH9Q9HC56 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDH9Q9HC56 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
PCDH9Q9HC56 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.68■■□□□ 1.06
PCDH9Q9HC56 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH9Q9HC56 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.68■■□□□ 1.06
PCDH9Q9HC56 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH9Q9HC56 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.68■■□□□ 1.06
PCDH9Q9HC56 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH9Q9HC56 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.68■■□□□ 1.06
PCDH9Q9HC56 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH9Q9HC56 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH9Q9HC56 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH9Q9HC56 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
PCDH9Q9HC56 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
PCDH9Q9HC56 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH9Q9HC56 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDH9Q9HC56 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDH9Q9HC56 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.67■■□□□ 1.06
PCDH9Q9HC56 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDH9Q9HC56 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.67■■□□□ 1.06
PCDH9Q9HC56 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDH9Q9HC56 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
PCDH9Q9HC56 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.67■■□□□ 1.06
PCDH9Q9HC56 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDH9Q9HC56 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDH9Q9HC56 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDH9Q9HC56 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
PCDH9Q9HC56 AL157384.1-201ENST00000445995 2473 ntBASIC21.67■■□□□ 1.06
PCDH9Q9HC56 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
PCDH9Q9HC56 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
PCDH9Q9HC56 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDH9Q9HC56 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.66■■□□□ 1.06
PCDH9Q9HC56 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCDH9Q9HC56 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDH9Q9HC56 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDH9Q9HC56 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
PCDH9Q9HC56 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDH9Q9HC56 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDH9Q9HC56 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
PCDH9Q9HC56 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
PCDH9Q9HC56 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDH9Q9HC56 AC027612.3-201ENST00000413684 1047 ntBASIC21.65■■□□□ 1.06
PCDH9Q9HC56 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.65■■□□□ 1.06
PCDH9Q9HC56 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDH9Q9HC56 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDH9Q9HC56 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDH9Q9HC56 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDH9Q9HC56 LINC01521-201ENST00000504184 1943 ntBASIC21.65■■□□□ 1.06
PCDH9Q9HC56 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.65■■□□□ 1.06
PCDH9Q9HC56 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCDH9Q9HC56 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.64■■□□□ 1.06
PCDH9Q9HC56 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.64■■□□□ 1.06
PCDH9Q9HC56 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.64■■□□□ 1.06
PCDH9Q9HC56 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDH9Q9HC56 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDH9Q9HC56 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.64■■□□□ 1.05
PCDH9Q9HC56 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms