Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 COX20-201ENST00000366528 568 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 DUX4L2-201ENST00000561772 1275 ntBASIC16.28■□□□□ 0.2
CCDC140Q96MF4 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 DUX4L6-201ENST00000626483 1275 ntBASIC16.28■□□□□ 0.2
CCDC140Q96MF4 DUX4L1-201ENST00000627662 1275 ntBASIC16.28■□□□□ 0.2
CCDC140Q96MF4 DUX4L8-201ENST00000629013 1275 ntBASIC16.28■□□□□ 0.2
CCDC140Q96MF4 DUX4L3-201ENST00000630187 1275 ntBASIC16.28■□□□□ 0.2
CCDC140Q96MF4 DUX4L7-201ENST00000630678 1275 ntBASIC16.28■□□□□ 0.2
CCDC140Q96MF4 DUX4L5-201ENST00000630834 1275 ntBASIC16.28■□□□□ 0.2
CCDC140Q96MF4 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 PALM-207ENST00000590161 2137 ntTSL 4 BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC140Q96MF4 AC004854.2-201ENST00000608450 1441 ntBASIC16.28■□□□□ 0.2
CCDC140Q96MF4 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC16.27■□□□□ 0.2
CCDC140Q96MF4 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
CCDC140Q96MF4 AC061975.6-201ENST00000579045 1553 ntBASIC16.27■□□□□ 0.2
CCDC140Q96MF4 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CCDC140Q96MF4 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC140Q96MF4 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC140Q96MF4 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC140Q96MF4 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC16.27■□□□□ 0.2
CCDC140Q96MF4 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC140Q96MF4 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC16.27■□□□□ 0.2
CCDC140Q96MF4 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC140Q96MF4 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC140Q96MF4 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC140Q96MF4 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC16.27■□□□□ 0.2
CCDC140Q96MF4 AC138907.5-202ENST00000569484 235 ntBASIC16.27■□□□□ 0.2
CCDC140Q96MF4 AC104187.1-201ENST00000607510 612 ntBASIC16.27■□□□□ 0.2
CCDC140Q96MF4 MIR6821-201ENST00000617625 74 ntBASIC16.27■□□□□ 0.2
CCDC140Q96MF4 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC140Q96MF4 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC16.27■□□□□ 0.19
CCDC140Q96MF4 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC140Q96MF4 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC140Q96MF4 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC140Q96MF4 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
CCDC140Q96MF4 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 PALM-208ENST00000592155 2272 ntTSL 4 BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 HACD1-201ENST00000326961 773 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 PLD4-205ENST00000553861 667 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 KRT18P61-201ENST00000585825 1298 ntBASIC16.26■□□□□ 0.19
CCDC140Q96MF4 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 AC087623.3-201ENST00000607047 1098 ntBASIC16.26■□□□□ 0.19
CCDC140Q96MF4 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC140Q96MF4 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 AP004607.4-201ENST00000530158 1459 ntBASIC16.25■□□□□ 0.19
CCDC140Q96MF4 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 AC010141.2-201ENST00000452426 721 ntBASIC16.25■□□□□ 0.19
CCDC140Q96MF4 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 AL049796.1-201ENST00000565336 1766 ntBASIC16.25■□□□□ 0.19
CCDC140Q96MF4 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CCDC140Q96MF4 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC140Q96MF4 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC140Q96MF4 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC140Q96MF4 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC140Q96MF4 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC140Q96MF4 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC140Q96MF4 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC140Q96MF4 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms