Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HMGB4Q8WW32 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGB4Q8WW32 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGB4Q8WW32 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGB4Q8WW32 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGB4Q8WW32 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGB4Q8WW32 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HMGB4Q8WW32 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC21.13■□□□□ 0.97
HMGB4Q8WW32 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.13■□□□□ 0.97
HMGB4Q8WW32 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.13■□□□□ 0.97
HMGB4Q8WW32 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
HMGB4Q8WW32 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HMGB4Q8WW32 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
HMGB4Q8WW32 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 LSM12P1-201ENST00000411836 588 ntBASIC21.12■□□□□ 0.97
HMGB4Q8WW32 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 AC098590.1-201ENST00000468126 897 ntBASIC21.12■□□□□ 0.97
HMGB4Q8WW32 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.12■□□□□ 0.97
HMGB4Q8WW32 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
HMGB4Q8WW32 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB4Q8WW32 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
HMGB4Q8WW32 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.11■□□□□ 0.97
HMGB4Q8WW32 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.11■□□□□ 0.97
HMGB4Q8WW32 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.11■□□□□ 0.97
HMGB4Q8WW32 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB4Q8WW32 AC006058.3-201ENST00000606217 1069 ntBASIC21.11■□□□□ 0.97
HMGB4Q8WW32 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB4Q8WW32 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
HMGB4Q8WW32 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGB4Q8WW32 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.1■□□□□ 0.97
HMGB4Q8WW32 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB4Q8WW32 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB4Q8WW32 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
HMGB4Q8WW32 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.09■□□□□ 0.97
HMGB4Q8WW32 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB4Q8WW32 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.09■□□□□ 0.97
HMGB4Q8WW32 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.09■□□□□ 0.97
HMGB4Q8WW32 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.09■□□□□ 0.97
HMGB4Q8WW32 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB4Q8WW32 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGB4Q8WW32 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 AL158047.1-201ENST00000445918 881 ntBASIC21.08■□□□□ 0.97
HMGB4Q8WW32 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.08■□□□□ 0.97
HMGB4Q8WW32 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms