Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CCDC28AQ8IWP9 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28AQ8IWP9 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28AQ8IWP9 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28AQ8IWP9 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CCDC28AQ8IWP9 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28AQ8IWP9 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
CCDC28AQ8IWP9 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC17.52■□□□□ 0.39
CCDC28AQ8IWP9 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
CCDC28AQ8IWP9 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.39
CCDC28AQ8IWP9 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC28AQ8IWP9 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC28AQ8IWP9 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC28AQ8IWP9 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28AQ8IWP9 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
CCDC28AQ8IWP9 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28AQ8IWP9 RP9P-202ENST00000450133 1212 ntBASIC17.5■□□□□ 0.39
CCDC28AQ8IWP9 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC28AQ8IWP9 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CCDC28AQ8IWP9 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28AQ8IWP9 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28AQ8IWP9 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CCDC28AQ8IWP9 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28AQ8IWP9 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 ABHD17AP3-201ENST00000503096 1137 ntBASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28AQ8IWP9 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 AC007613.1-201ENST00000572811 2597 ntBASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 AC106820.2-201ENST00000563775 3264 ntBASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28AQ8IWP9 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28AQ8IWP9 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC28AQ8IWP9 AC116562.4-201ENST00000641316 2276 ntBASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms