Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AP006294.2-201ENST00000641667 209 ntBASIC25.76■■□□□ 1.71
USP48Q86UV5 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
USP48Q86UV5 MKRN4P-201ENST00000444706 1521 ntBASIC25.76■■□□□ 1.71
USP48Q86UV5 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
USP48Q86UV5 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
USP48Q86UV5 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
USP48Q86UV5 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
USP48Q86UV5 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
USP48Q86UV5 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
USP48Q86UV5 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
USP48Q86UV5 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC25.75■■□□□ 1.71
USP48Q86UV5 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
USP48Q86UV5 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC25.75■■□□□ 1.71
USP48Q86UV5 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
USP48Q86UV5 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC25.75■■□□□ 1.71
USP48Q86UV5 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC25.75■■□□□ 1.71
USP48Q86UV5 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
USP48Q86UV5 AC139530.1-201ENST00000575312 1977 ntBASIC25.75■■□□□ 1.71
USP48Q86UV5 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
USP48Q86UV5 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
USP48Q86UV5 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
USP48Q86UV5 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
USP48Q86UV5 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
USP48Q86UV5 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC25.74■■□□□ 1.71
USP48Q86UV5 AC068338.2-201ENST00000563278 1430 ntBASIC25.74■■□□□ 1.71
USP48Q86UV5 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC25.74■■□□□ 1.71
USP48Q86UV5 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC25.74■■□□□ 1.71
USP48Q86UV5 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
USP48Q86UV5 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC25.74■■□□□ 1.71
USP48Q86UV5 RARRES2P4-201ENST00000514074 484 ntBASIC25.74■■□□□ 1.71
USP48Q86UV5 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
USP48Q86UV5 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC25.74■■□□□ 1.71
USP48Q86UV5 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
USP48Q86UV5 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
USP48Q86UV5 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
USP48Q86UV5 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC25.74■■□□□ 1.71
USP48Q86UV5 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
USP48Q86UV5 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
USP48Q86UV5 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
USP48Q86UV5 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC25.73■■□□□ 1.71
USP48Q86UV5 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
USP48Q86UV5 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC25.73■■□□□ 1.71
USP48Q86UV5 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC25.73■■□□□ 1.71
USP48Q86UV5 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
USP48Q86UV5 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC25.73■■□□□ 1.71
USP48Q86UV5 AC010141.2-201ENST00000452426 721 ntBASIC25.73■■□□□ 1.71
USP48Q86UV5 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
USP48Q86UV5 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC25.73■■□□□ 1.71
USP48Q86UV5 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
USP48Q86UV5 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC25.73■■□□□ 1.71
USP48Q86UV5 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC25.73■■□□□ 1.71
USP48Q86UV5 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
USP48Q86UV5 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
USP48Q86UV5 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC25.73■■□□□ 1.71
USP48Q86UV5 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC25.73■■□□□ 1.71
USP48Q86UV5 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
USP48Q86UV5 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC25.72■■□□□ 1.71
USP48Q86UV5 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
USP48Q86UV5 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
USP48Q86UV5 AC055733.4-201ENST00000638462 1354 ntBASIC25.72■■□□□ 1.71
USP48Q86UV5 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
USP48Q86UV5 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
USP48Q86UV5 AL596275.1-201ENST00000423464 877 ntBASIC25.72■■□□□ 1.71
USP48Q86UV5 CYP2T1P-201ENST00000432607 1285 ntBASIC25.72■■□□□ 1.71
USP48Q86UV5 GCSHP5-201ENST00000443090 522 ntBASIC25.72■■□□□ 1.71
USP48Q86UV5 TERF1P5-201ENST00000477545 1207 ntBASIC25.72■■□□□ 1.71
USP48Q86UV5 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC25.72■■□□□ 1.71
USP48Q86UV5 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC25.72■■□□□ 1.71
USP48Q86UV5 KRT18P20-201ENST00000548986 1279 ntBASIC25.72■■□□□ 1.71
USP48Q86UV5 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC25.72■■□□□ 1.71
USP48Q86UV5 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
USP48Q86UV5 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC25.72■■□□□ 1.71
USP48Q86UV5 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
USP48Q86UV5 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
USP48Q86UV5 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
USP48Q86UV5 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
USP48Q86UV5 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC25.71■■□□□ 1.71
USP48Q86UV5 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
USP48Q86UV5 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
USP48Q86UV5 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC25.71■■□□□ 1.71
USP48Q86UV5 AC013268.1-206ENST00000638368 961 ntBASIC25.71■■□□□ 1.71
USP48Q86UV5 AC112229.1-201ENST00000639295 961 ntBASIC25.71■■□□□ 1.71
USP48Q86UV5 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
USP48Q86UV5 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC25.7■■□□□ 1.7
USP48Q86UV5 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC25.7■■□□□ 1.7
USP48Q86UV5 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC25.7■■□□□ 1.7
USP48Q86UV5 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
USP48Q86UV5 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
USP48Q86UV5 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC25.7■■□□□ 1.7
USP48Q86UV5 AC138907.5-202ENST00000569484 235 ntBASIC25.7■■□□□ 1.7
USP48Q86UV5 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC25.7■■□□□ 1.7
USP48Q86UV5 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC25.7■■□□□ 1.7
USP48Q86UV5 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC25.7■■□□□ 1.7
USP48Q86UV5 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC25.7■■□□□ 1.7
USP48Q86UV5 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
USP48Q86UV5 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
USP48Q86UV5 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC25.69■■□□□ 1.7
USP48Q86UV5 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP48Q86UV5 ESRRAP1-201ENST00000400596 1257 ntBASIC25.69■■□□□ 1.7
USP48Q86UV5 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms