Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
UBE3DQ7Z6J8 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
UBE3DQ7Z6J8 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.97■□□□□ 0.79
UBE3DQ7Z6J8 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.97■□□□□ 0.79
UBE3DQ7Z6J8 AC010141.2-201ENST00000452426 721 ntBASIC19.97■□□□□ 0.79
UBE3DQ7Z6J8 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.97■□□□□ 0.79
UBE3DQ7Z6J8 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.97■□□□□ 0.79
UBE3DQ7Z6J8 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.97■□□□□ 0.79
UBE3DQ7Z6J8 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
UBE3DQ7Z6J8 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
UBE3DQ7Z6J8 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
UBE3DQ7Z6J8 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
UBE3DQ7Z6J8 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.97■□□□□ 0.79
UBE3DQ7Z6J8 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
UBE3DQ7Z6J8 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.95■□□□□ 0.79
UBE3DQ7Z6J8 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 NTF6G-201ENST00000591094 616 ntBASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 AP001160.3-201ENST00000601484 763 ntBASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
UBE3DQ7Z6J8 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
UBE3DQ7Z6J8 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.94■□□□□ 0.78
UBE3DQ7Z6J8 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.94■□□□□ 0.78
UBE3DQ7Z6J8 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
UBE3DQ7Z6J8 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.94■□□□□ 0.78
UBE3DQ7Z6J8 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.94■□□□□ 0.78
UBE3DQ7Z6J8 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
UBE3DQ7Z6J8 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
UBE3DQ7Z6J8 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
UBE3DQ7Z6J8 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.94■□□□□ 0.78
UBE3DQ7Z6J8 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
UBE3DQ7Z6J8 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
UBE3DQ7Z6J8 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.94■□□□□ 0.78
UBE3DQ7Z6J8 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 AL049796.1-201ENST00000565336 1766 ntBASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
UBE3DQ7Z6J8 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 SLC7A5P2-201ENST00000553010 536 ntBASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms