Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC88AQ3V6T2 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC25.97■■□□□ 1.75
CCDC88AQ3V6T2 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC88AQ3V6T2 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC88AQ3V6T2 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 MIR718-201ENST00000390190 70 ntBASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 AC069544.1-201ENST00000609399 999 ntBASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 PKM-204ENST00000449901 2526 ntTSL 2 BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 MDFI-202ENST00000373050 809 ntTSL 2 BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 AC012618.2-201ENST00000428058 849 ntBASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC25.96■■□□□ 1.75
CCDC88AQ3V6T2 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC25.95■■□□□ 1.75
CCDC88AQ3V6T2 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC25.95■■□□□ 1.75
CCDC88AQ3V6T2 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC88AQ3V6T2 KRT16P2-201ENST00000414673 1423 ntBASIC25.95■■□□□ 1.74
CCDC88AQ3V6T2 SNORA78-201ENST00000459373 127 ntBASIC25.95■■□□□ 1.74
CCDC88AQ3V6T2 AC008175.2-201ENST00000612840 297 ntBASIC25.95■■□□□ 1.74
CCDC88AQ3V6T2 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC88AQ3V6T2 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC88AQ3V6T2 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
CCDC88AQ3V6T2 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC88AQ3V6T2 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC88AQ3V6T2 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC25.94■■□□□ 1.74
CCDC88AQ3V6T2 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC25.94■■□□□ 1.74
CCDC88AQ3V6T2 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC25.94■■□□□ 1.74
CCDC88AQ3V6T2 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC25.94■■□□□ 1.74
CCDC88AQ3V6T2 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC88AQ3V6T2 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC25.94■■□□□ 1.74
CCDC88AQ3V6T2 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC88AQ3V6T2 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC25.94■■□□□ 1.74
CCDC88AQ3V6T2 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC88AQ3V6T2 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC88AQ3V6T2 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC25.94■■□□□ 1.74
CCDC88AQ3V6T2 PNMA6B-201ENST00000538162 1200 ntBASIC25.94■■□□□ 1.74
CCDC88AQ3V6T2 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC25.94■■□□□ 1.74
CCDC88AQ3V6T2 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC88AQ3V6T2 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC25.93■■□□□ 1.74
CCDC88AQ3V6T2 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC25.93■■□□□ 1.74
CCDC88AQ3V6T2 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC25.93■■□□□ 1.74
CCDC88AQ3V6T2 FAM210CP-201ENST00000445714 574 ntBASIC25.93■■□□□ 1.74
CCDC88AQ3V6T2 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC25.93■■□□□ 1.74
CCDC88AQ3V6T2 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC88AQ3V6T2 AC233263.1-201ENST00000578059 224 ntBASIC25.93■■□□□ 1.74
CCDC88AQ3V6T2 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC25.93■■□□□ 1.74
CCDC88AQ3V6T2 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC25.93■■□□□ 1.74
CCDC88AQ3V6T2 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC88AQ3V6T2 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 AC211429.1-201ENST00000415277 523 ntBASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 CD44-222ENST00000526025 1052 ntTSL 2 BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 AC139530.1-201ENST00000575312 1977 ntBASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC25.92■■□□□ 1.74
CCDC88AQ3V6T2 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 AC120498.10-201ENST00000621827 505 ntBASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 KRT17P3-201ENST00000420566 1262 ntBASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC88AQ3V6T2 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC25.9■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms