Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRK1Q38SD2 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRK1Q38SD2 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRK1Q38SD2 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
LRRK1Q38SD2 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.88■□□□□ 0.93
LRRK1Q38SD2 AC016405.3-201ENST00000607710 860 ntBASIC20.88■□□□□ 0.93
LRRK1Q38SD2 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRK1Q38SD2 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.88■□□□□ 0.93
LRRK1Q38SD2 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.88■□□□□ 0.93
LRRK1Q38SD2 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 AL355802.2-201ENST00000402069 882 ntBASIC20.87■□□□□ 0.93
LRRK1Q38SD2 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 AL109923.1-201ENST00000618799 583 ntBASIC20.87■□□□□ 0.93
LRRK1Q38SD2 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRK1Q38SD2 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRK1Q38SD2 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRK1Q38SD2 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
LRRK1Q38SD2 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRK1Q38SD2 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRK1Q38SD2 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LRRK1Q38SD2 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRK1Q38SD2 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRK1Q38SD2 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LRRK1Q38SD2 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRK1Q38SD2 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRK1Q38SD2 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LRRK1Q38SD2 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.84■□□□□ 0.93
LRRK1Q38SD2 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRK1Q38SD2 TERF1P5-201ENST00000477545 1207 ntBASIC20.84■□□□□ 0.93
LRRK1Q38SD2 AC005181.1-201ENST00000604782 1256 ntBASIC20.84■□□□□ 0.93
LRRK1Q38SD2 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.84■□□□□ 0.93
LRRK1Q38SD2 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LRRK1Q38SD2 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.84■□□□□ 0.93
LRRK1Q38SD2 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRK1Q38SD2 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.84■□□□□ 0.93
LRRK1Q38SD2 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
LRRK1Q38SD2 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRK1Q38SD2 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRK1Q38SD2 GPX1P1-201ENST00000388829 606 ntBASIC20.83■□□□□ 0.93
LRRK1Q38SD2 AC007322.3-201ENST00000426526 701 ntBASIC20.83■□□□□ 0.93
LRRK1Q38SD2 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.83■□□□□ 0.93
LRRK1Q38SD2 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.83■□□□□ 0.93
LRRK1Q38SD2 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.83■□□□□ 0.93
LRRK1Q38SD2 AC243732.1-201ENST00000612648 864 ntBASIC20.83■□□□□ 0.93
LRRK1Q38SD2 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRK1Q38SD2 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LRRK1Q38SD2 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.83■□□□□ 0.93
LRRK1Q38SD2 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.83■□□□□ 0.93
LRRK1Q38SD2 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LRRK1Q38SD2 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.83■□□□□ 0.93
LRRK1Q38SD2 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.83■□□□□ 0.93
LRRK1Q38SD2 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRK1Q38SD2 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRK1Q38SD2 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LRRK1Q38SD2 AC091799.1-201ENST00000422823 811 ntBASIC20.83■□□□□ 0.92
LRRK1Q38SD2 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.83■□□□□ 0.92
LRRK1Q38SD2 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.83■□□□□ 0.92
LRRK1Q38SD2 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.83■□□□□ 0.92
LRRK1Q38SD2 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.83■□□□□ 0.92
LRRK1Q38SD2 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms