Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CX3CR1P49238 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CX3CR1P49238 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CX3CR1P49238 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CX3CR1P49238 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.44■□□□□ 0.54
CX3CR1P49238 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CR1P49238 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.43■□□□□ 0.54
CX3CR1P49238 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.43■□□□□ 0.54
CX3CR1P49238 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CR1P49238 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CR1P49238 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CX3CR1P49238 MIR572-201ENST00000384983 95 ntBASIC18.43■□□□□ 0.54
CX3CR1P49238 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC18.43■□□□□ 0.54
CX3CR1P49238 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CR1P49238 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CR1P49238 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CR1P49238 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CR1P49238 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CR1P49238 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CR1P49238 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CX3CR1P49238 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CR1P49238 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.43■□□□□ 0.54
CX3CR1P49238 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
CX3CR1P49238 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CX3CR1P49238 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.42■□□□□ 0.54
CX3CR1P49238 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.42■□□□□ 0.54
CX3CR1P49238 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.42■□□□□ 0.54
CX3CR1P49238 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CX3CR1P49238 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.42■□□□□ 0.54
CX3CR1P49238 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.42■□□□□ 0.54
CX3CR1P49238 AL121603.2-201ENST00000557373 2117 ntBASIC18.42■□□□□ 0.54
CX3CR1P49238 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC18.42■□□□□ 0.54
CX3CR1P49238 AL031432.3-201ENST00000607698 485 ntBASIC18.42■□□□□ 0.54
CX3CR1P49238 AL136967.2-201ENST00000623968 743 ntBASIC18.42■□□□□ 0.54
CX3CR1P49238 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CX3CR1P49238 BX005040.4-201ENST00000637145 1518 ntBASIC18.42■□□□□ 0.54
CX3CR1P49238 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
CX3CR1P49238 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CX3CR1P49238 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CX3CR1P49238 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CR1P49238 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CR1P49238 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.41■□□□□ 0.54
CX3CR1P49238 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CR1P49238 AC005224.4-201ENST00000583262 1652 ntBASIC18.41■□□□□ 0.54
CX3CR1P49238 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CR1P49238 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CR1P49238 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CR1P49238 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CR1P49238 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.41■□□□□ 0.54
CX3CR1P49238 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.41■□□□□ 0.54
CX3CR1P49238 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CR1P49238 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CR1P49238 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.41■□□□□ 0.54
CX3CR1P49238 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC18.41■□□□□ 0.54
CX3CR1P49238 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC18.41■□□□□ 0.54
CX3CR1P49238 RALB-208ENST00000631312 311 ntTSL 5 BASIC18.41■□□□□ 0.54
CX3CR1P49238 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CX3CR1P49238 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CR1P49238 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CR1P49238 AC055733.4-201ENST00000638462 1354 ntBASIC18.41■□□□□ 0.54
CX3CR1P49238 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CR1P49238 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CX3CR1P49238 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CX3CR1P49238 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CX3CR1P49238 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.4■□□□□ 0.54
CX3CR1P49238 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CX3CR1P49238 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CX3CR1P49238 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.4■□□□□ 0.54
CX3CR1P49238 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CX3CR1P49238 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CX3CR1P49238 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CX3CR1P49238 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CX3CR1P49238 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CX3CR1P49238 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.4■□□□□ 0.54
CX3CR1P49238 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.4■□□□□ 0.54
CX3CR1P49238 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CX3CR1P49238 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.4■□□□□ 0.54
CX3CR1P49238 AL139246.5-201ENST00000606645 996 ntBASIC18.4■□□□□ 0.54
CX3CR1P49238 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CX3CR1P49238 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CX3CR1P49238 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CX3CR1P49238 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CX3CR1P49238 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CX3CR1P49238 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CX3CR1P49238 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.39■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms