Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.11■□□□□ 0.97
CXCL12P48061 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CXCL12P48061 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.11■□□□□ 0.97
CXCL12P48061 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CXCL12P48061 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CXCL12P48061 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CXCL12P48061 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CXCL12P48061 ECEL1P3-201ENST00000427961 737 ntBASIC21.11■□□□□ 0.97
CXCL12P48061 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.11■□□□□ 0.97
CXCL12P48061 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CXCL12P48061 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CXCL12P48061 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.11■□□□□ 0.97
CXCL12P48061 AL589743.5-201ENST00000616611 1050 ntBASIC21.11■□□□□ 0.97
CXCL12P48061 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.11■□□□□ 0.97
CXCL12P48061 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CXCL12P48061 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CXCL12P48061 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CXCL12P48061 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CXCL12P48061 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.1■□□□□ 0.97
CXCL12P48061 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.1■□□□□ 0.97
CXCL12P48061 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CXCL12P48061 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.1■□□□□ 0.97
CXCL12P48061 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CXCL12P48061 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CXCL12P48061 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CXCL12P48061 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC21.1■□□□□ 0.97
CXCL12P48061 PNMA6B-201ENST00000538162 1200 ntBASIC21.1■□□□□ 0.97
CXCL12P48061 RN7SL471P-201ENST00000580476 299 ntBASIC21.1■□□□□ 0.97
CXCL12P48061 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.1■□□□□ 0.97
CXCL12P48061 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CXCL12P48061 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.1■□□□□ 0.97
CXCL12P48061 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CXCL12P48061 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.09■□□□□ 0.97
CXCL12P48061 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CXCL12P48061 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CXCL12P48061 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CXCL12P48061 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.09■□□□□ 0.97
CXCL12P48061 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CXCL12P48061 AC091799.1-201ENST00000422823 811 ntBASIC21.09■□□□□ 0.97
CXCL12P48061 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CXCL12P48061 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CXCL12P48061 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.09■□□□□ 0.97
CXCL12P48061 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CXCL12P48061 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.09■□□□□ 0.97
CXCL12P48061 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.09■□□□□ 0.97
CXCL12P48061 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.09■□□□□ 0.97
CXCL12P48061 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.09■□□□□ 0.97
CXCL12P48061 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.09■□□□□ 0.97
CXCL12P48061 REXO1L12P-201ENST00000622156 912 ntBASIC21.09■□□□□ 0.97
CXCL12P48061 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CXCL12P48061 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CXCL12P48061 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CXCL12P48061 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CXCL12P48061 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
CXCL12P48061 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CXCL12P48061 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CXCL12P48061 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CXCL12P48061 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
CXCL12P48061 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CXCL12P48061 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CXCL12P48061 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
CXCL12P48061 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.08■□□□□ 0.97
CXCL12P48061 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC21.08■□□□□ 0.97
CXCL12P48061 AC092368.3-202ENST00000574180 1591 ntBASIC21.08■□□□□ 0.97
CXCL12P48061 Z99916.2-201ENST00000604037 246 ntBASIC21.08■□□□□ 0.97
CXCL12P48061 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CXCL12P48061 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CXCL12P48061 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.08■□□□□ 0.96
CXCL12P48061 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.08■□□□□ 0.96
CXCL12P48061 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CXCL12P48061 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CXCL12P48061 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.07■□□□□ 0.96
CXCL12P48061 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CXCL12P48061 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CXCL12P48061 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.07■□□□□ 0.96
CXCL12P48061 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
CXCL12P48061 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CXCL12P48061 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CXCL12P48061 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC21.07■□□□□ 0.96
CXCL12P48061 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.07■□□□□ 0.96
CXCL12P48061 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.07■□□□□ 0.96
CXCL12P48061 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
CXCL12P48061 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CXCL12P48061 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CXCL12P48061 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CXCL12P48061 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CXCL12P48061 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CXCL12P48061 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CXCL12P48061 MCRIP2P1-201ENST00000394346 511 ntBASIC21.06■□□□□ 0.96
CXCL12P48061 MIR1224-201ENST00000408193 85 ntBASIC21.06■□□□□ 0.96
CXCL12P48061 AC211429.1-201ENST00000415277 523 ntBASIC21.06■□□□□ 0.96
CXCL12P48061 AC245052.3-201ENST00000450182 901 ntBASIC21.06■□□□□ 0.96
CXCL12P48061 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.06■□□□□ 0.96
CXCL12P48061 SNORA78-201ENST00000459373 127 ntBASIC21.06■□□□□ 0.96
CXCL12P48061 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CXCL12P48061 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
CXCL12P48061 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.06■□□□□ 0.96
CXCL12P48061 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CXCL12P48061 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CXCL12P48061 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms