Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTPN9P43378 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
PTPN9P43378 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.91■■□□□ 1.1
PTPN9P43378 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.91■■□□□ 1.1
PTPN9P43378 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.91■■□□□ 1.1
PTPN9P43378 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.91■■□□□ 1.1
PTPN9P43378 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.91■■□□□ 1.1
PTPN9P43378 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.91■■□□□ 1.1
PTPN9P43378 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
PTPN9P43378 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.91■■□□□ 1.1
PTPN9P43378 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
PTPN9P43378 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTPN9P43378 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTPN9P43378 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTPN9P43378 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.9■■□□□ 1.1
PTPN9P43378 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.9■■□□□ 1.1
PTPN9P43378 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.9■■□□□ 1.1
PTPN9P43378 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PTPN9P43378 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
PTPN9P43378 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTPN9P43378 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
PTPN9P43378 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PTPN9P43378 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.89■■□□□ 1.1
PTPN9P43378 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
PTPN9P43378 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.89■■□□□ 1.1
PTPN9P43378 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PTPN9P43378 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PTPN9P43378 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
PTPN9P43378 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.89■■□□□ 1.09
PTPN9P43378 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.89■■□□□ 1.09
PTPN9P43378 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
PTPN9P43378 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.89■■□□□ 1.09
PTPN9P43378 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PTPN9P43378 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.89■■□□□ 1.09
PTPN9P43378 AP001160.3-201ENST00000601484 763 ntBASIC21.89■■□□□ 1.09
PTPN9P43378 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PTPN9P43378 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
PTPN9P43378 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
PTPN9P43378 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
PTPN9P43378 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
PTPN9P43378 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.89■■□□□ 1.09
PTPN9P43378 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
PTPN9P43378 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTPN9P43378 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
PTPN9P43378 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PTPN9P43378 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTPN9P43378 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.88■■□□□ 1.09
PTPN9P43378 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.88■■□□□ 1.09
PTPN9P43378 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.88■■□□□ 1.09
PTPN9P43378 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.88■■□□□ 1.09
PTPN9P43378 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
PTPN9P43378 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTPN9P43378 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTPN9P43378 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTPN9P43378 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PTPN9P43378 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTPN9P43378 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.87■■□□□ 1.09
PTPN9P43378 KRT19P1-201ENST00000405746 1186 ntBASIC21.87■■□□□ 1.09
PTPN9P43378 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.87■■□□□ 1.09
PTPN9P43378 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTPN9P43378 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PTPN9P43378 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.87■■□□□ 1.09
PTPN9P43378 AL049796.1-201ENST00000565336 1766 ntBASIC21.87■■□□□ 1.09
PTPN9P43378 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PTPN9P43378 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTPN9P43378 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.86■■□□□ 1.09
PTPN9P43378 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTPN9P43378 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTPN9P43378 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.86■■□□□ 1.09
PTPN9P43378 AF106564.1-201ENST00000607058 2553 ntBASIC21.86■■□□□ 1.09
PTPN9P43378 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
PTPN9P43378 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTPN9P43378 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
PTPN9P43378 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
PTPN9P43378 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
PTPN9P43378 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.86■■□□□ 1.09
PTPN9P43378 NTF6G-201ENST00000591094 616 ntBASIC21.86■■□□□ 1.09
PTPN9P43378 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
PTPN9P43378 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.86■■□□□ 1.09
PTPN9P43378 KRT16P2-201ENST00000414673 1423 ntBASIC21.86■■□□□ 1.09
PTPN9P43378 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTPN9P43378 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTPN9P43378 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
PTPN9P43378 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTPN9P43378 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTPN9P43378 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN9P43378 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
PTPN9P43378 AC005229.4-201ENST00000610085 2198 ntBASIC21.85■■□□□ 1.09
PTPN9P43378 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN9P43378 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN9P43378 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
PTPN9P43378 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.85■■□□□ 1.09
PTPN9P43378 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN9P43378 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN9P43378 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN9P43378 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.85■■□□□ 1.09
PTPN9P43378 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
PTPN9P43378 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN9P43378 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.85■■□□□ 1.09
PTPN9P43378 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms