Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC28.06■■■□□ 2.08
RXRBP28702 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC28.06■■■□□ 2.08
RXRBP28702 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
RXRBP28702 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC28.05■■■□□ 2.08
RXRBP28702 KRT18P57-201ENST00000443599 1254 ntBASIC28.05■■■□□ 2.08
RXRBP28702 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC28.05■■■□□ 2.08
RXRBP28702 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC28.05■■■□□ 2.08
RXRBP28702 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC28.05■■■□□ 2.08
RXRBP28702 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
RXRBP28702 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
RXRBP28702 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC28.04■■■□□ 2.08
RXRBP28702 AC079089.2-201ENST00000531211 1277 ntBASIC28.04■■■□□ 2.08
RXRBP28702 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC28.04■■■□□ 2.08
RXRBP28702 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC28.04■■■□□ 2.08
RXRBP28702 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC28.04■■■□□ 2.08
RXRBP28702 LINC00543-201ENST00000567234 1845 ntBASIC28.04■■■□□ 2.08
RXRBP28702 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
RXRBP28702 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
RXRBP28702 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC28.03■■■□□ 2.08
RXRBP28702 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC28.03■■■□□ 2.08
RXRBP28702 CRK-204ENST00000574295 1391 ntTSL 5 BASIC28.03■■■□□ 2.08
RXRBP28702 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
RXRBP28702 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC28.03■■■□□ 2.08
RXRBP28702 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
RXRBP28702 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC28.03■■■□□ 2.08
RXRBP28702 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC28.03■■■□□ 2.08
RXRBP28702 THEM4-205ENST00000489410 643 ntTSL 2 BASIC28.03■■■□□ 2.08
RXRBP28702 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC28.03■■■□□ 2.08
RXRBP28702 FAM21FP-204ENST00000608637 956 ntBASIC28.03■■■□□ 2.08
RXRBP28702 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
RXRBP28702 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC28.03■■■□□ 2.08
RXRBP28702 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC28.03■■■□□ 2.08
RXRBP28702 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
RXRBP28702 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC28.03■■■□□ 2.08
RXRBP28702 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC28.03■■■□□ 2.08
RXRBP28702 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
RXRBP28702 OR7E47P-201ENST00000546390 1422 ntBASIC28.02■■■□□ 2.08
RXRBP28702 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC28.02■■■□□ 2.08
RXRBP28702 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC28.02■■■□□ 2.08
RXRBP28702 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC28.02■■■□□ 2.08
RXRBP28702 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC28.02■■■□□ 2.08
RXRBP28702 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC28.02■■■□□ 2.08
RXRBP28702 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC28.02■■■□□ 2.08
RXRBP28702 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC28.02■■■□□ 2.08
RXRBP28702 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.07
RXRBP28702 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC28.01■■■□□ 2.07
RXRBP28702 AC113347.1-201ENST00000413321 391 ntBASIC28.01■■■□□ 2.07
RXRBP28702 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
RXRBP28702 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC28.01■■■□□ 2.07
RXRBP28702 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
RXRBP28702 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC28.01■■■□□ 2.07
RXRBP28702 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC28.01■■■□□ 2.07
RXRBP28702 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
RXRBP28702 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
RXRBP28702 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC28.01■■■□□ 2.07
RXRBP28702 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
RXRBP28702 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC28■■■□□ 2.07
RXRBP28702 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
RXRBP28702 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC28■■■□□ 2.07
RXRBP28702 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
RXRBP28702 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC28■■■□□ 2.07
RXRBP28702 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC28■■■□□ 2.07
RXRBP28702 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
RXRBP28702 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC27.99■■■□□ 2.07
RXRBP28702 DUSP8P4-201ENST00000399538 1761 ntBASIC27.99■■■□□ 2.07
RXRBP28702 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC27.99■■■□□ 2.07
RXRBP28702 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC27.99■■■□□ 2.07
RXRBP28702 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
RXRBP28702 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
RXRBP28702 KRASP1-201ENST00000407852 552 ntBASIC27.99■■■□□ 2.07
RXRBP28702 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC27.99■■■□□ 2.07
RXRBP28702 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC27.99■■■□□ 2.07
RXRBP28702 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC27.99■■■□□ 2.07
RXRBP28702 KRT126P-201ENST00000549467 1181 ntBASIC27.99■■■□□ 2.07
RXRBP28702 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC27.99■■■□□ 2.07
RXRBP28702 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC27.99■■■□□ 2.07
RXRBP28702 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
RXRBP28702 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
RXRBP28702 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC27.99■■■□□ 2.07
RXRBP28702 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
RXRBP28702 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC27.98■■■□□ 2.07
RXRBP28702 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC27.98■■■□□ 2.07
RXRBP28702 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
RXRBP28702 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC27.98■■■□□ 2.07
RXRBP28702 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC27.98■■■□□ 2.07
RXRBP28702 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC27.98■■■□□ 2.07
RXRBP28702 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC27.98■■■□□ 2.07
RXRBP28702 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC27.98■■■□□ 2.07
RXRBP28702 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
RXRBP28702 AP006587.3-201ENST00000525742 1516 ntBASIC27.97■■■□□ 2.07
RXRBP28702 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
RXRBP28702 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
RXRBP28702 DUX4L26-201ENST00000489078 1255 ntBASIC27.97■■■□□ 2.07
RXRBP28702 AL034346.1-201ENST00000568244 1277 ntBASIC27.97■■■□□ 2.07
RXRBP28702 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
RXRBP28702 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC27.97■■■□□ 2.07
RXRBP28702 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC27.96■■■□□ 2.07
RXRBP28702 MCRIP2P1-201ENST00000394346 511 ntBASIC27.96■■■□□ 2.07
RXRBP28702 AL355355.2-201ENST00000442321 338 ntBASIC27.96■■■□□ 2.07
RXRBP28702 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC27.96■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms