Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A2P12110 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.76■□□□□ 0.91
COL6A2P12110 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A2P12110 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A2P12110 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A2P12110 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.75■□□□□ 0.91
COL6A2P12110 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.75■□□□□ 0.91
COL6A2P12110 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A2P12110 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A2P12110 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
COL6A2P12110 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A2P12110 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.75■□□□□ 0.91
COL6A2P12110 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A2P12110 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.75■□□□□ 0.91
COL6A2P12110 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.75■□□□□ 0.91
COL6A2P12110 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.75■□□□□ 0.91
COL6A2P12110 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A2P12110 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A2P12110 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A2P12110 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.74■□□□□ 0.91
COL6A2P12110 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A2P12110 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
COL6A2P12110 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
COL6A2P12110 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A2P12110 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
COL6A2P12110 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A2P12110 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A2P12110 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A2P12110 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A2P12110 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A2P12110 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.74■□□□□ 0.91
COL6A2P12110 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
COL6A2P12110 AC024257.2-201ENST00000549699 147 ntBASIC20.74■□□□□ 0.91
COL6A2P12110 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.74■□□□□ 0.91
COL6A2P12110 AL136162.1-201ENST00000607711 1078 ntBASIC20.74■□□□□ 0.91
COL6A2P12110 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A2P12110 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.74■□□□□ 0.91
COL6A2P12110 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.74■□□□□ 0.91
COL6A2P12110 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A2P12110 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A2P12110 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A2P12110 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A2P12110 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A2P12110 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A2P12110 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
COL6A2P12110 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A2P12110 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
COL6A2P12110 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
COL6A2P12110 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A2P12110 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.73■□□□□ 0.91
COL6A2P12110 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.73■□□□□ 0.91
COL6A2P12110 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.73■□□□□ 0.91
COL6A2P12110 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.73■□□□□ 0.91
COL6A2P12110 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A2P12110 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
COL6A2P12110 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A2P12110 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A2P12110 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.73■□□□□ 0.91
COL6A2P12110 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.73■□□□□ 0.91
COL6A2P12110 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.73■□□□□ 0.91
COL6A2P12110 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A2P12110 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A2P12110 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A2P12110 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.72■□□□□ 0.91
COL6A2P12110 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A2P12110 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A2P12110 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A2P12110 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A2P12110 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A2P12110 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
COL6A2P12110 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.72■□□□□ 0.91
COL6A2P12110 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
COL6A2P12110 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A2P12110 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A2P12110 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A2P12110 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
COL6A2P12110 LINC01006-201ENST00000333319 2292 ntBASIC20.72■□□□□ 0.91
COL6A2P12110 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.72■□□□□ 0.91
COL6A2P12110 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A2P12110 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A2P12110 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A2P12110 AC135279.3-201ENST00000610945 1311 ntBASIC20.72■□□□□ 0.91
COL6A2P12110 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.72■□□□□ 0.91
COL6A2P12110 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.72■□□□□ 0.91
COL6A2P12110 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.72■□□□□ 0.91
COL6A2P12110 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A2P12110 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A2P12110 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A2P12110 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
COL6A2P12110 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
COL6A2P12110 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A2P12110 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.71■□□□□ 0.91
COL6A2P12110 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.71■□□□□ 0.91
COL6A2P12110 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.71■□□□□ 0.91
COL6A2P12110 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
COL6A2P12110 PLK5-205ENST00000642079 1969 ntBASIC20.71■□□□□ 0.91
COL6A2P12110 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A2P12110 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
COL6A2P12110 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A2P12110 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms