Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.64■□□□□ 0.89
HOXC4P09017 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.64■□□□□ 0.89
HOXC4P09017 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.64■□□□□ 0.89
HOXC4P09017 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC4P09017 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
HOXC4P09017 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC4P09017 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC4P09017 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC4P09017 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC4P09017 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC4P09017 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.63■□□□□ 0.89
HOXC4P09017 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC4P09017 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC4P09017 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.63■□□□□ 0.89
HOXC4P09017 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC4P09017 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
HOXC4P09017 AL355802.2-201ENST00000402069 882 ntBASIC20.63■□□□□ 0.89
HOXC4P09017 AC073210.2-201ENST00000430369 194 ntBASIC20.63■□□□□ 0.89
HOXC4P09017 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC4P09017 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
HOXC4P09017 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
HOXC4P09017 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC4P09017 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC4P09017 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC4P09017 AC012676.1-201ENST00000574705 1949 ntBASIC20.63■□□□□ 0.89
HOXC4P09017 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC4P09017 C11orf96-202ENST00000528572 1834 ntBASIC20.62■□□□□ 0.89
HOXC4P09017 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC4P09017 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
HOXC4P09017 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
HOXC4P09017 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC4P09017 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HOXC4P09017 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.62■□□□□ 0.89
HOXC4P09017 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.62■□□□□ 0.89
HOXC4P09017 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.62■□□□□ 0.89
HOXC4P09017 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.62■□□□□ 0.89
HOXC4P09017 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC4P09017 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.61■□□□□ 0.89
HOXC4P09017 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.61■□□□□ 0.89
HOXC4P09017 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC4P09017 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC4P09017 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC4P09017 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC4P09017 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC4P09017 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC4P09017 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC4P09017 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
HOXC4P09017 AC091799.1-201ENST00000422823 811 ntBASIC20.61■□□□□ 0.89
HOXC4P09017 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC4P09017 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.61■□□□□ 0.89
HOXC4P09017 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.61■□□□□ 0.89
HOXC4P09017 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.61■□□□□ 0.89
HOXC4P09017 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.61■□□□□ 0.89
HOXC4P09017 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.61■□□□□ 0.89
HOXC4P09017 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.61■□□□□ 0.89
HOXC4P09017 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.61■□□□□ 0.89
HOXC4P09017 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC4P09017 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC4P09017 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC4P09017 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC4P09017 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.6■□□□□ 0.89
HOXC4P09017 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC4P09017 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC4P09017 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.6■□□□□ 0.89
HOXC4P09017 RARRES2P4-201ENST00000514074 484 ntBASIC20.6■□□□□ 0.89
HOXC4P09017 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.6■□□□□ 0.89
HOXC4P09017 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.6■□□□□ 0.89
HOXC4P09017 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC4P09017 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC4P09017 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC4P09017 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.6■□□□□ 0.89
HOXC4P09017 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC4P09017 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC4P09017 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC4P09017 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC4P09017 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.59■□□□□ 0.89
HOXC4P09017 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
HOXC4P09017 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC4P09017 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC4P09017 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
HOXC4P09017 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
HOXC4P09017 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.59■□□□□ 0.89
HOXC4P09017 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
HOXC4P09017 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.59■□□□□ 0.89
HOXC4P09017 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC4P09017 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC4P09017 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC4P09017 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.58■□□□□ 0.89
HOXC4P09017 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC4P09017 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC4P09017 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.58■□□□□ 0.89
HOXC4P09017 FAM21FP-204ENST00000608637 956 ntBASIC20.58■□□□□ 0.89
HOXC4P09017 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.58■□□□□ 0.89
HOXC4P09017 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC4P09017 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
HOXC4P09017 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.58■□□□□ 0.88
HOXC4P09017 MKRN4P-201ENST00000444706 1521 ntBASIC20.58■□□□□ 0.88
HOXC4P09017 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC4P09017 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC4P09017 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms