Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RB1P06400 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RB1P06400 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC22.4■■□□□ 1.18
RB1P06400 AC091799.1-201ENST00000422823 811 ntBASIC22.4■■□□□ 1.18
RB1P06400 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC22.4■■□□□ 1.18
RB1P06400 RPPH1-201ENST00000516869 333 ntBASIC22.4■■□□□ 1.18
RB1P06400 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC22.4■■□□□ 1.18
RB1P06400 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RB1P06400 AL589743.5-201ENST00000616611 1050 ntBASIC22.4■■□□□ 1.18
RB1P06400 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
RB1P06400 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RB1P06400 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RB1P06400 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
RB1P06400 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC22.4■■□□□ 1.18
RB1P06400 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC22.4■■□□□ 1.18
RB1P06400 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC22.4■■□□□ 1.18
RB1P06400 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
RB1P06400 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
RB1P06400 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.18
RB1P06400 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
RB1P06400 KRT17P3-201ENST00000420566 1262 ntBASIC22.39■■□□□ 1.17
RB1P06400 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC22.39■■□□□ 1.17
RB1P06400 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RB1P06400 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RB1P06400 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC22.39■■□□□ 1.17
RB1P06400 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
RB1P06400 FAM197Y4-202ENST00000622692 608 ntBASIC22.39■■□□□ 1.17
RB1P06400 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
RB1P06400 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RB1P06400 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
RB1P06400 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
RB1P06400 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
RB1P06400 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC22.38■■□□□ 1.17
RB1P06400 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC22.38■■□□□ 1.17
RB1P06400 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC22.38■■□□□ 1.17
RB1P06400 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC22.38■■□□□ 1.17
RB1P06400 MIR4497-201ENST00000583208 89 ntBASIC22.38■■□□□ 1.17
RB1P06400 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RB1P06400 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
RB1P06400 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC22.38■■□□□ 1.17
RB1P06400 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC22.38■■□□□ 1.17
RB1P06400 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
RB1P06400 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RB1P06400 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
RB1P06400 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22.38■■□□□ 1.17
RB1P06400 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
RB1P06400 AC093323.1-202ENST00000635031 2045 ntBASIC22.37■■□□□ 1.17
RB1P06400 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RB1P06400 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RB1P06400 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC22.37■■□□□ 1.17
RB1P06400 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RB1P06400 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
RB1P06400 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.37■■□□□ 1.17
RB1P06400 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RB1P06400 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RB1P06400 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
RB1P06400 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RB1P06400 MCRIP2P1-201ENST00000394346 511 ntBASIC22.36■■□□□ 1.17
RB1P06400 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RB1P06400 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RB1P06400 PNMA6B-201ENST00000538162 1200 ntBASIC22.36■■□□□ 1.17
RB1P06400 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC22.36■■□□□ 1.17
RB1P06400 RN7SL471P-201ENST00000580476 299 ntBASIC22.36■■□□□ 1.17
RB1P06400 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RB1P06400 AC087742.1-201ENST00000575880 1738 ntBASIC22.36■■□□□ 1.17
RB1P06400 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC22.36■■□□□ 1.17
RB1P06400 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RB1P06400 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RB1P06400 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.35■■□□□ 1.17
RB1P06400 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC22.35■■□□□ 1.17
RB1P06400 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC22.35■■□□□ 1.17
RB1P06400 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RB1P06400 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
RB1P06400 AC245052.3-201ENST00000450182 901 ntBASIC22.35■■□□□ 1.17
RB1P06400 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC22.35■■□□□ 1.17
RB1P06400 C1QBPP2-201ENST00000528754 825 ntBASIC22.35■■□□□ 1.17
RB1P06400 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC22.35■■□□□ 1.17
RB1P06400 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC22.35■■□□□ 1.17
RB1P06400 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC22.35■■□□□ 1.17
RB1P06400 GCA-201ENST00000233612 1694 ntTSL 2 BASIC22.35■■□□□ 1.17
RB1P06400 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
RB1P06400 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
RB1P06400 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC22.35■■□□□ 1.17
RB1P06400 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC22.35■■□□□ 1.17
RB1P06400 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
RB1P06400 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RB1P06400 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RB1P06400 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
RB1P06400 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC22.34■■□□□ 1.17
RB1P06400 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC22.34■■□□□ 1.17
RB1P06400 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC22.34■■□□□ 1.17
RB1P06400 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC22.34■■□□□ 1.17
RB1P06400 AC073912.3-201ENST00000624414 853 ntBASIC22.34■■□□□ 1.17
RB1P06400 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RB1P06400 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC22.34■■□□□ 1.17
RB1P06400 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RB1P06400 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RB1P06400 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC22.34■■□□□ 1.17
RB1P06400 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RB1P06400 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms