Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LDB3O75112 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LDB3O75112 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LDB3O75112 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LDB3O75112 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LDB3O75112 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.81■□□□□ 0.76
LDB3O75112 KRT19P1-201ENST00000405746 1186 ntBASIC19.81■□□□□ 0.76
LDB3O75112 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.81■□□□□ 0.76
LDB3O75112 AC138907.5-202ENST00000569484 235 ntBASIC19.81■□□□□ 0.76
LDB3O75112 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.81■□□□□ 0.76
LDB3O75112 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LDB3O75112 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.81■□□□□ 0.76
LDB3O75112 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
LDB3O75112 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
LDB3O75112 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LDB3O75112 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LDB3O75112 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LDB3O75112 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LDB3O75112 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LDB3O75112 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
LDB3O75112 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.8■□□□□ 0.76
LDB3O75112 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
LDB3O75112 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.8■□□□□ 0.76
LDB3O75112 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.8■□□□□ 0.76
LDB3O75112 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LDB3O75112 AP001160.3-201ENST00000601484 763 ntBASIC19.8■□□□□ 0.76
LDB3O75112 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
LDB3O75112 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LDB3O75112 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.8■□□□□ 0.76
LDB3O75112 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.8■□□□□ 0.76
LDB3O75112 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LDB3O75112 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
LDB3O75112 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.8■□□□□ 0.76
LDB3O75112 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.79■□□□□ 0.76
LDB3O75112 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LDB3O75112 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.79■□□□□ 0.76
LDB3O75112 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LDB3O75112 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
LDB3O75112 PKD1P6-201ENST00000343738 4769 ntBASIC19.79■□□□□ 0.76
LDB3O75112 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LDB3O75112 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.79■□□□□ 0.76
LDB3O75112 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.79■□□□□ 0.76
LDB3O75112 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.79■□□□□ 0.76
LDB3O75112 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
LDB3O75112 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LDB3O75112 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LDB3O75112 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.78■□□□□ 0.76
LDB3O75112 AC061975.6-201ENST00000579045 1553 ntBASIC19.78■□□□□ 0.76
LDB3O75112 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
LDB3O75112 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LDB3O75112 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LDB3O75112 AC007375.3-201ENST00000600936 2314 ntBASIC19.78■□□□□ 0.76
LDB3O75112 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LDB3O75112 AC010141.2-201ENST00000452426 721 ntBASIC19.78■□□□□ 0.76
LDB3O75112 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LDB3O75112 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.78■□□□□ 0.76
LDB3O75112 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.78■□□□□ 0.76
LDB3O75112 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LDB3O75112 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LDB3O75112 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LDB3O75112 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
LDB3O75112 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
LDB3O75112 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LDB3O75112 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LDB3O75112 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.77■□□□□ 0.76
LDB3O75112 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.77■□□□□ 0.76
LDB3O75112 AC008175.2-201ENST00000612840 297 ntBASIC19.77■□□□□ 0.76
LDB3O75112 AC026310.3-201ENST00000625186 2373 ntBASIC19.77■□□□□ 0.75
LDB3O75112 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.77■□□□□ 0.75
LDB3O75112 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
LDB3O75112 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LDB3O75112 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LDB3O75112 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LDB3O75112 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
LDB3O75112 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LDB3O75112 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LDB3O75112 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.76■□□□□ 0.75
LDB3O75112 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LDB3O75112 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LDB3O75112 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
LDB3O75112 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LDB3O75112 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LDB3O75112 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LDB3O75112 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LDB3O75112 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LDB3O75112 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
LDB3O75112 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LDB3O75112 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.75■□□□□ 0.75
LDB3O75112 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
LDB3O75112 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.75■□□□□ 0.75
LDB3O75112 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.75■□□□□ 0.75
LDB3O75112 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.75■□□□□ 0.75
LDB3O75112 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.75■□□□□ 0.75
LDB3O75112 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.75■□□□□ 0.75
LDB3O75112 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.75■□□□□ 0.75
LDB3O75112 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.75■□□□□ 0.75
LDB3O75112 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
LDB3O75112 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.75■□□□□ 0.75
LDB3O75112 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LDB3O75112 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms