Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LSM4Q9Y4Z0 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LSM4Q9Y4Z0 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC16.83■□□□□ 0.28
LSM4Q9Y4Z0 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LSM4Q9Y4Z0 SP2-202ENST00000613139 908 ntTSL 5 BASIC16.83■□□□□ 0.28
LSM4Q9Y4Z0 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC16.83■□□□□ 0.28
LSM4Q9Y4Z0 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LSM4Q9Y4Z0 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC16.82■□□□□ 0.28
LSM4Q9Y4Z0 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LSM4Q9Y4Z0 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LSM4Q9Y4Z0 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LSM4Q9Y4Z0 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LSM4Q9Y4Z0 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC16.82■□□□□ 0.28
LSM4Q9Y4Z0 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LSM4Q9Y4Z0 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 GTSE1-AS1-202ENST00000623117 1518 ntBASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 GRAMD4P2-201ENST00000423297 1097 ntBASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC16.81■□□□□ 0.28
LSM4Q9Y4Z0 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 SNX3-202ENST00000349379 890 ntTSL 2 BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 AC034268.1-201ENST00000441047 882 ntBASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 DYM-203ENST00000442713 2147 ntTSL 2 BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LSM4Q9Y4Z0 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LSM4Q9Y4Z0 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 AC133637.1-201ENST00000624115 1537 ntBASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
LSM4Q9Y4Z0 LINC01006-201ENST00000333319 2292 ntBASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms