Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 AF213884.3-201ENST00000563833 479 ntBASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 AL031432.3-201ENST00000607698 485 ntBASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HIF3AQ9Y2N7 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.02■□□□□ 0.63
HIF3AQ9Y2N7 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
HIF3AQ9Y2N7 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
HIF3AQ9Y2N7 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HIF3AQ9Y2N7 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
HIF3AQ9Y2N7 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 AC005224.4-201ENST00000583262 1652 ntBASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 AL049796.1-201ENST00000565336 1766 ntBASIC19.01■□□□□ 0.63
HIF3AQ9Y2N7 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 BX005040.4-201ENST00000637145 1518 ntBASIC19■□□□□ 0.63
HIF3AQ9Y2N7 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19■□□□□ 0.63
HIF3AQ9Y2N7 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
HIF3AQ9Y2N7 NALT1-201ENST00000429224 738 ntTSL 5 BASIC18.99■□□□□ 0.63
HIF3AQ9Y2N7 AL136967.2-201ENST00000623968 743 ntBASIC18.99■□□□□ 0.63
HIF3AQ9Y2N7 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HIF3AQ9Y2N7 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HIF3AQ9Y2N7 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HIF3AQ9Y2N7 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
HIF3AQ9Y2N7 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HIF3AQ9Y2N7 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
HIF3AQ9Y2N7 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
HIF3AQ9Y2N7 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HIF3AQ9Y2N7 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HIF3AQ9Y2N7 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.98■□□□□ 0.63
HIF3AQ9Y2N7 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC18.98■□□□□ 0.63
HIF3AQ9Y2N7 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.98■□□□□ 0.63
HIF3AQ9Y2N7 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.98■□□□□ 0.63
HIF3AQ9Y2N7 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
HIF3AQ9Y2N7 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.98■□□□□ 0.63
HIF3AQ9Y2N7 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.98■□□□□ 0.63
HIF3AQ9Y2N7 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HIF3AQ9Y2N7 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.98■□□□□ 0.63
HIF3AQ9Y2N7 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HIF3AQ9Y2N7 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HIF3AQ9Y2N7 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.98■□□□□ 0.63
HIF3AQ9Y2N7 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.97■□□□□ 0.63
HIF3AQ9Y2N7 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HIF3AQ9Y2N7 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HIF3AQ9Y2N7 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.97■□□□□ 0.63
HIF3AQ9Y2N7 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HIF3AQ9Y2N7 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.97■□□□□ 0.63
HIF3AQ9Y2N7 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HIF3AQ9Y2N7 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HIF3AQ9Y2N7 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.97■□□□□ 0.63
HIF3AQ9Y2N7 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HIF3AQ9Y2N7 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.96■□□□□ 0.63
HIF3AQ9Y2N7 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.96■□□□□ 0.63
HIF3AQ9Y2N7 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HIF3AQ9Y2N7 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HIF3AQ9Y2N7 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.96■□□□□ 0.63
HIF3AQ9Y2N7 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HIF3AQ9Y2N7 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HIF3AQ9Y2N7 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.96■□□□□ 0.63
HIF3AQ9Y2N7 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.96■□□□□ 0.63
HIF3AQ9Y2N7 SUDS3P1-201ENST00000505831 966 ntBASIC18.96■□□□□ 0.63
HIF3AQ9Y2N7 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC18.96■□□□□ 0.63
HIF3AQ9Y2N7 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HIF3AQ9Y2N7 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms