Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
NDE1Q9NXR1 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NDE1Q9NXR1 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NDE1Q9NXR1 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
NDE1Q9NXR1 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
NDE1Q9NXR1 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NDE1Q9NXR1 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.35■□□□□ 0.85
NDE1Q9NXR1 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NDE1Q9NXR1 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
NDE1Q9NXR1 AFG3L1P-217ENST00000557444 2447 ntBASIC20.35■□□□□ 0.85
NDE1Q9NXR1 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.35■□□□□ 0.85
NDE1Q9NXR1 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.35■□□□□ 0.85
NDE1Q9NXR1 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 AC010980.1-201ENST00000587192 1142 ntBASIC20.34■□□□□ 0.85
NDE1Q9NXR1 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
NDE1Q9NXR1 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NDE1Q9NXR1 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
NDE1Q9NXR1 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
NDE1Q9NXR1 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
NDE1Q9NXR1 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NDE1Q9NXR1 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NDE1Q9NXR1 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
NDE1Q9NXR1 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.33■□□□□ 0.85
NDE1Q9NXR1 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
NDE1Q9NXR1 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.33■□□□□ 0.85
NDE1Q9NXR1 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NDE1Q9NXR1 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.33■□□□□ 0.85
NDE1Q9NXR1 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
NDE1Q9NXR1 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.33■□□□□ 0.85
NDE1Q9NXR1 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NDE1Q9NXR1 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NDE1Q9NXR1 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
NDE1Q9NXR1 AC087289.5-201ENST00000586076 3175 ntBASIC20.33■□□□□ 0.84
NDE1Q9NXR1 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NDE1Q9NXR1 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NDE1Q9NXR1 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NDE1Q9NXR1 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
NDE1Q9NXR1 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NDE1Q9NXR1 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.32■□□□□ 0.84
NDE1Q9NXR1 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.32■□□□□ 0.84
NDE1Q9NXR1 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NDE1Q9NXR1 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NDE1Q9NXR1 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NDE1Q9NXR1 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NDE1Q9NXR1 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NDE1Q9NXR1 AL020996.1-203ENST00000536896 2307 ntBASIC20.32■□□□□ 0.84
NDE1Q9NXR1 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.32■□□□□ 0.84
NDE1Q9NXR1 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
NDE1Q9NXR1 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NDE1Q9NXR1 AP005212.1-201ENST00000581547 1997 ntBASIC20.32■□□□□ 0.84
NDE1Q9NXR1 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
NDE1Q9NXR1 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NDE1Q9NXR1 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NDE1Q9NXR1 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
NDE1Q9NXR1 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.31■□□□□ 0.84
NDE1Q9NXR1 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.31■□□□□ 0.84
NDE1Q9NXR1 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
NDE1Q9NXR1 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NDE1Q9NXR1 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.31■□□□□ 0.84
NDE1Q9NXR1 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NDE1Q9NXR1 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NDE1Q9NXR1 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NDE1Q9NXR1 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
NDE1Q9NXR1 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms