Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC22.55■■□□□ 1.2
CISHQ9NSE2 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CISHQ9NSE2 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC22.55■■□□□ 1.2
CISHQ9NSE2 GALNS-213ENST00000569433 723 ntTSL 3 BASIC22.55■■□□□ 1.2
CISHQ9NSE2 AC138907.5-202ENST00000569484 235 ntBASIC22.55■■□□□ 1.2
CISHQ9NSE2 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC22.55■■□□□ 1.2
CISHQ9NSE2 ANKRD20A6P-201ENST00000618763 204 ntBASIC22.55■■□□□ 1.2
CISHQ9NSE2 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC22.55■■□□□ 1.2
CISHQ9NSE2 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CISHQ9NSE2 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC22.55■■□□□ 1.2
CISHQ9NSE2 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CISHQ9NSE2 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CISHQ9NSE2 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CISHQ9NSE2 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC22.54■■□□□ 1.2
CISHQ9NSE2 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CISHQ9NSE2 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC22.54■■□□□ 1.2
CISHQ9NSE2 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC22.54■■□□□ 1.2
CISHQ9NSE2 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CISHQ9NSE2 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
CISHQ9NSE2 KRT18P5-201ENST00000436075 1291 ntBASIC22.54■■□□□ 1.2
CISHQ9NSE2 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
CISHQ9NSE2 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC22.54■■□□□ 1.2
CISHQ9NSE2 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
CISHQ9NSE2 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CISHQ9NSE2 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.54■■□□□ 1.2
CISHQ9NSE2 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC22.54■■□□□ 1.2
CISHQ9NSE2 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CISHQ9NSE2 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CISHQ9NSE2 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CISHQ9NSE2 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC22.53■■□□□ 1.2
CISHQ9NSE2 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC22.53■■□□□ 1.2
CISHQ9NSE2 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC22.53■■□□□ 1.2
CISHQ9NSE2 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CISHQ9NSE2 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CISHQ9NSE2 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC22.53■■□□□ 1.2
CISHQ9NSE2 STX5-203ENST00000394690 1568 ntTSL 5 BASIC22.53■■□□□ 1.2
CISHQ9NSE2 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CISHQ9NSE2 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
CISHQ9NSE2 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CISHQ9NSE2 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CISHQ9NSE2 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CISHQ9NSE2 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
CISHQ9NSE2 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC22.52■■□□□ 1.2
CISHQ9NSE2 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
CISHQ9NSE2 DYM-203ENST00000442713 2147 ntTSL 2 BASIC22.52■■□□□ 1.2
CISHQ9NSE2 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CISHQ9NSE2 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CISHQ9NSE2 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CISHQ9NSE2 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
CISHQ9NSE2 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC22.52■■□□□ 1.2
CISHQ9NSE2 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
CISHQ9NSE2 AC026310.3-201ENST00000625186 2373 ntBASIC22.52■■□□□ 1.19
CISHQ9NSE2 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CISHQ9NSE2 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CISHQ9NSE2 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
CISHQ9NSE2 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC22.51■■□□□ 1.19
CISHQ9NSE2 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC22.51■■□□□ 1.19
CISHQ9NSE2 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CISHQ9NSE2 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC22.51■■□□□ 1.19
CISHQ9NSE2 AC010141.2-201ENST00000452426 721 ntBASIC22.51■■□□□ 1.19
CISHQ9NSE2 AL162430.1-201ENST00000480705 870 ntBASIC22.51■■□□□ 1.19
CISHQ9NSE2 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC22.51■■□□□ 1.19
CISHQ9NSE2 AP001160.3-201ENST00000601484 763 ntBASIC22.51■■□□□ 1.19
CISHQ9NSE2 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CISHQ9NSE2 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CISHQ9NSE2 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CISHQ9NSE2 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CISHQ9NSE2 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CISHQ9NSE2 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC22.5■■□□□ 1.19
CISHQ9NSE2 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CISHQ9NSE2 KRT19P1-201ENST00000405746 1186 ntBASIC22.5■■□□□ 1.19
CISHQ9NSE2 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC22.5■■□□□ 1.19
CISHQ9NSE2 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC22.5■■□□□ 1.19
CISHQ9NSE2 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CISHQ9NSE2 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
CISHQ9NSE2 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC22.5■■□□□ 1.19
CISHQ9NSE2 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CISHQ9NSE2 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CISHQ9NSE2 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
CISHQ9NSE2 AC007375.3-201ENST00000600936 2314 ntBASIC22.49■■□□□ 1.19
CISHQ9NSE2 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC22.49■■□□□ 1.19
CISHQ9NSE2 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CISHQ9NSE2 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC22.49■■□□□ 1.19
CISHQ9NSE2 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC22.49■■□□□ 1.19
CISHQ9NSE2 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CISHQ9NSE2 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
CISHQ9NSE2 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CISHQ9NSE2 AC061975.6-201ENST00000579045 1553 ntBASIC22.49■■□□□ 1.19
CISHQ9NSE2 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
CISHQ9NSE2 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CISHQ9NSE2 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC22.48■■□□□ 1.19
CISHQ9NSE2 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CISHQ9NSE2 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CISHQ9NSE2 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC22.48■■□□□ 1.19
CISHQ9NSE2 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CISHQ9NSE2 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC22.48■■□□□ 1.19
CISHQ9NSE2 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC22.48■■□□□ 1.19
CISHQ9NSE2 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CISHQ9NSE2 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CISHQ9NSE2 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms