Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC23.83■■□□□ 1.41
ERCC4Q92889 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
ERCC4Q92889 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC23.83■■□□□ 1.41
ERCC4Q92889 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
ERCC4Q92889 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC23.83■■□□□ 1.41
ERCC4Q92889 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC23.83■■□□□ 1.41
ERCC4Q92889 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
ERCC4Q92889 AP005435.1-201ENST00000529293 1178 ntBASIC23.83■■□□□ 1.41
ERCC4Q92889 DUX4L19-201ENST00000557448 1267 ntBASIC23.83■■□□□ 1.41
ERCC4Q92889 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC23.83■■□□□ 1.41
ERCC4Q92889 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC23.83■■□□□ 1.41
ERCC4Q92889 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
ERCC4Q92889 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
ERCC4Q92889 LINC01006-201ENST00000333319 2292 ntBASIC23.82■■□□□ 1.4
ERCC4Q92889 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
ERCC4Q92889 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
ERCC4Q92889 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
ERCC4Q92889 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC23.82■■□□□ 1.4
ERCC4Q92889 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
ERCC4Q92889 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
ERCC4Q92889 AL136116.3-201ENST00000402907 1138 ntBASIC23.82■■□□□ 1.4
ERCC4Q92889 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.82■■□□□ 1.4
ERCC4Q92889 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC23.82■■□□□ 1.4
ERCC4Q92889 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
ERCC4Q92889 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC23.82■■□□□ 1.4
ERCC4Q92889 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
ERCC4Q92889 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.82■■□□□ 1.4
ERCC4Q92889 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC23.81■■□□□ 1.4
ERCC4Q92889 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ERCC4Q92889 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
ERCC4Q92889 AL049796.1-201ENST00000565336 1766 ntBASIC23.81■■□□□ 1.4
ERCC4Q92889 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ERCC4Q92889 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.81■■□□□ 1.4
ERCC4Q92889 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC23.81■■□□□ 1.4
ERCC4Q92889 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC23.81■■□□□ 1.4
ERCC4Q92889 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
ERCC4Q92889 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC23.81■■□□□ 1.4
ERCC4Q92889 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.81■■□□□ 1.4
ERCC4Q92889 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
ERCC4Q92889 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ERCC4Q92889 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
ERCC4Q92889 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ERCC4Q92889 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
ERCC4Q92889 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
ERCC4Q92889 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
ERCC4Q92889 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
ERCC4Q92889 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
ERCC4Q92889 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ERCC4Q92889 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ERCC4Q92889 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
ERCC4Q92889 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ERCC4Q92889 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC23.8■■□□□ 1.4
ERCC4Q92889 AP006587.3-201ENST00000525742 1516 ntBASIC23.8■■□□□ 1.4
ERCC4Q92889 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ERCC4Q92889 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ERCC4Q92889 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ERCC4Q92889 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ERCC4Q92889 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ERCC4Q92889 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ERCC4Q92889 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
ERCC4Q92889 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC23.8■■□□□ 1.4
ERCC4Q92889 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ERCC4Q92889 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
ERCC4Q92889 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ERCC4Q92889 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
ERCC4Q92889 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ERCC4Q92889 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC23.8■■□□□ 1.4
ERCC4Q92889 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.8■■□□□ 1.4
ERCC4Q92889 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
ERCC4Q92889 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
ERCC4Q92889 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
ERCC4Q92889 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
ERCC4Q92889 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
ERCC4Q92889 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
ERCC4Q92889 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
ERCC4Q92889 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
ERCC4Q92889 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
ERCC4Q92889 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
ERCC4Q92889 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
ERCC4Q92889 MIR4767-201ENST00000582827 78 ntBASIC23.79■■□□□ 1.4
ERCC4Q92889 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
ERCC4Q92889 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC23.79■■□□□ 1.4
ERCC4Q92889 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
ERCC4Q92889 AC092667.1-201ENST00000434301 2586 ntBASIC23.79■■□□□ 1.4
ERCC4Q92889 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
ERCC4Q92889 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
ERCC4Q92889 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
ERCC4Q92889 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC23.78■■□□□ 1.4
ERCC4Q92889 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
ERCC4Q92889 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ERCC4Q92889 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
ERCC4Q92889 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ERCC4Q92889 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC23.78■■□□□ 1.4
ERCC4Q92889 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
ERCC4Q92889 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
ERCC4Q92889 SMUG1P1-201ENST00000590640 811 ntBASIC23.78■■□□□ 1.4
ERCC4Q92889 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
ERCC4Q92889 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC23.78■■□□□ 1.4
ERCC4Q92889 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ERCC4Q92889 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms