Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC89Q8N998 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.82■■□□□ 1.08
CCDC89Q8N998 AL157384.1-201ENST00000445995 2473 ntBASIC21.82■■□□□ 1.08
CCDC89Q8N998 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
CCDC89Q8N998 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC89Q8N998 AP006587.3-201ENST00000525742 1516 ntBASIC21.81■■□□□ 1.08
CCDC89Q8N998 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC89Q8N998 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.81■■□□□ 1.08
CCDC89Q8N998 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC89Q8N998 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.81■■□□□ 1.08
CCDC89Q8N998 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC89Q8N998 BX842568.3-201ENST00000418104 571 ntBASIC21.81■■□□□ 1.08
CCDC89Q8N998 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.81■■□□□ 1.08
CCDC89Q8N998 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC89Q8N998 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
CCDC89Q8N998 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC89Q8N998 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CCDC89Q8N998 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC89Q8N998 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC89Q8N998 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC89Q8N998 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.8■■□□□ 1.08
CCDC89Q8N998 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC89Q8N998 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.8■■□□□ 1.08
CCDC89Q8N998 UNC93B3-201ENST00000308076 687 ntBASIC21.8■■□□□ 1.08
CCDC89Q8N998 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
CCDC89Q8N998 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC89Q8N998 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
CCDC89Q8N998 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC89Q8N998 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC89Q8N998 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC89Q8N998 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC89Q8N998 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC89Q8N998 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC89Q8N998 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
CCDC89Q8N998 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC89Q8N998 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC89Q8N998 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC89Q8N998 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC89Q8N998 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC89Q8N998 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC89Q8N998 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.79■■□□□ 1.08
CCDC89Q8N998 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.79■■□□□ 1.08
CCDC89Q8N998 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC89Q8N998 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC89Q8N998 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC89Q8N998 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC89Q8N998 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
CCDC89Q8N998 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC89Q8N998 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC89Q8N998 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC89Q8N998 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC89Q8N998 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.78■■□□□ 1.08
CCDC89Q8N998 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.78■■□□□ 1.08
CCDC89Q8N998 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC89Q8N998 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC89Q8N998 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC89Q8N998 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC89Q8N998 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC89Q8N998 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC89Q8N998 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC89Q8N998 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC89Q8N998 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.78■■□□□ 1.08
CCDC89Q8N998 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.78■■□□□ 1.08
CCDC89Q8N998 AC233992.3-201ENST00000607491 485 ntBASIC21.78■■□□□ 1.08
CCDC89Q8N998 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC89Q8N998 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC89Q8N998 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC89Q8N998 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC89Q8N998 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
CCDC89Q8N998 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC89Q8N998 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC89Q8N998 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
CCDC89Q8N998 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC89Q8N998 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC89Q8N998 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.77■■□□□ 1.08
CCDC89Q8N998 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CCDC89Q8N998 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC89Q8N998 AC126544.1-201ENST00000580842 1059 ntBASIC21.77■■□□□ 1.08
CCDC89Q8N998 SMUG1P1-201ENST00000590640 811 ntBASIC21.77■■□□□ 1.08
CCDC89Q8N998 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
CCDC89Q8N998 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC89Q8N998 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
CCDC89Q8N998 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC89Q8N998 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC89Q8N998 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC89Q8N998 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC89Q8N998 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
CCDC89Q8N998 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC89Q8N998 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
CCDC89Q8N998 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
CCDC89Q8N998 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC89Q8N998 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC89Q8N998 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC89Q8N998 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC89Q8N998 AL136162.1-201ENST00000607711 1078 ntBASIC21.76■■□□□ 1.07
CCDC89Q8N998 AC131212.1-201ENST00000613771 668 ntBASIC21.76■■□□□ 1.07
CCDC89Q8N998 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.76■■□□□ 1.07
CCDC89Q8N998 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC89Q8N998 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC89Q8N998 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms