Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VRK3Q8IV63 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
VRK3Q8IV63 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
VRK3Q8IV63 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
VRK3Q8IV63 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VRK3Q8IV63 CLDN5-201ENST00000403084 2357 ntBASIC20.67■□□□□ 0.9
VRK3Q8IV63 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.67■□□□□ 0.9
VRK3Q8IV63 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
VRK3Q8IV63 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
VRK3Q8IV63 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VRK3Q8IV63 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
VRK3Q8IV63 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VRK3Q8IV63 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.67■□□□□ 0.9
VRK3Q8IV63 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VRK3Q8IV63 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.67■□□□□ 0.9
VRK3Q8IV63 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
VRK3Q8IV63 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VRK3Q8IV63 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.67■□□□□ 0.9
VRK3Q8IV63 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.67■□□□□ 0.9
VRK3Q8IV63 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VRK3Q8IV63 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VRK3Q8IV63 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VRK3Q8IV63 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
VRK3Q8IV63 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VRK3Q8IV63 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.66■□□□□ 0.9
VRK3Q8IV63 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.66■□□□□ 0.9
VRK3Q8IV63 NTF6G-201ENST00000591094 616 ntBASIC20.66■□□□□ 0.9
VRK3Q8IV63 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.66■□□□□ 0.9
VRK3Q8IV63 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.66■□□□□ 0.9
VRK3Q8IV63 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VRK3Q8IV63 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.66■□□□□ 0.9
VRK3Q8IV63 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.66■□□□□ 0.9
VRK3Q8IV63 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.66■□□□□ 0.9
VRK3Q8IV63 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VRK3Q8IV63 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.65■□□□□ 0.9
VRK3Q8IV63 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
VRK3Q8IV63 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.65■□□□□ 0.9
VRK3Q8IV63 KRT18P5-201ENST00000436075 1291 ntBASIC20.65■□□□□ 0.9
VRK3Q8IV63 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.65■□□□□ 0.9
VRK3Q8IV63 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.65■□□□□ 0.9
VRK3Q8IV63 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
VRK3Q8IV63 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
VRK3Q8IV63 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
VRK3Q8IV63 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.64■□□□□ 0.9
VRK3Q8IV63 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VRK3Q8IV63 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VRK3Q8IV63 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VRK3Q8IV63 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.64■□□□□ 0.89
VRK3Q8IV63 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.64■□□□□ 0.89
VRK3Q8IV63 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VRK3Q8IV63 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.64■□□□□ 0.89
VRK3Q8IV63 AF106564.1-201ENST00000607058 2553 ntBASIC20.64■□□□□ 0.89
VRK3Q8IV63 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.64■□□□□ 0.89
VRK3Q8IV63 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VRK3Q8IV63 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.64■□□□□ 0.89
VRK3Q8IV63 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.63■□□□□ 0.89
VRK3Q8IV63 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.63■□□□□ 0.89
VRK3Q8IV63 AC061975.6-201ENST00000579045 1553 ntBASIC20.63■□□□□ 0.89
VRK3Q8IV63 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.63■□□□□ 0.89
VRK3Q8IV63 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
VRK3Q8IV63 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VRK3Q8IV63 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.63■□□□□ 0.89
VRK3Q8IV63 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
VRK3Q8IV63 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VRK3Q8IV63 AL162430.1-201ENST00000480705 870 ntBASIC20.63■□□□□ 0.89
VRK3Q8IV63 AC138907.5-202ENST00000569484 235 ntBASIC20.63■□□□□ 0.89
VRK3Q8IV63 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.63■□□□□ 0.89
VRK3Q8IV63 MIR5787-201ENST00000611784 55 ntBASIC20.63■□□□□ 0.89
VRK3Q8IV63 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
VRK3Q8IV63 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.63■□□□□ 0.89
VRK3Q8IV63 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
VRK3Q8IV63 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VRK3Q8IV63 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
VRK3Q8IV63 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VRK3Q8IV63 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
VRK3Q8IV63 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VRK3Q8IV63 AL137060.1-201ENST00000618151 2648 ntBASIC20.62■□□□□ 0.89
VRK3Q8IV63 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VRK3Q8IV63 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.62■□□□□ 0.89
VRK3Q8IV63 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.62■□□□□ 0.89
VRK3Q8IV63 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
VRK3Q8IV63 AL024507.2-201ENST00000606070 2574 ntBASIC20.62■□□□□ 0.89
VRK3Q8IV63 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VRK3Q8IV63 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VRK3Q8IV63 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VRK3Q8IV63 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VRK3Q8IV63 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.61■□□□□ 0.89
VRK3Q8IV63 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.61■□□□□ 0.89
VRK3Q8IV63 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
VRK3Q8IV63 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VRK3Q8IV63 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VRK3Q8IV63 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.61■□□□□ 0.89
VRK3Q8IV63 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.61■□□□□ 0.89
VRK3Q8IV63 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.61■□□□□ 0.89
VRK3Q8IV63 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.61■□□□□ 0.89
VRK3Q8IV63 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.61■□□□□ 0.89
VRK3Q8IV63 AP001160.3-201ENST00000601484 763 ntBASIC20.61■□□□□ 0.89
VRK3Q8IV63 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
VRK3Q8IV63 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.61■□□□□ 0.89
VRK3Q8IV63 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms