Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AP004607.4-201ENST00000530158 1459 ntBASIC20.04■□□□□ 0.8
UBE3DQ7Z6J8 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
UBE3DQ7Z6J8 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 AF106564.1-201ENST00000607058 2553 ntBASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 AC004854.2-201ENST00000608450 1441 ntBASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UBE3DQ7Z6J8 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
UBE3DQ7Z6J8 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
UBE3DQ7Z6J8 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
UBE3DQ7Z6J8 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.02■□□□□ 0.8
UBE3DQ7Z6J8 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
UBE3DQ7Z6J8 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
UBE3DQ7Z6J8 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
UBE3DQ7Z6J8 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.02■□□□□ 0.8
UBE3DQ7Z6J8 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.02■□□□□ 0.8
UBE3DQ7Z6J8 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.02■□□□□ 0.8
UBE3DQ7Z6J8 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.02■□□□□ 0.8
UBE3DQ7Z6J8 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
UBE3DQ7Z6J8 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
UBE3DQ7Z6J8 AC005229.4-201ENST00000610085 2198 ntBASIC20.02■□□□□ 0.8
UBE3DQ7Z6J8 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.02■□□□□ 0.8
UBE3DQ7Z6J8 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.79
UBE3DQ7Z6J8 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.02■□□□□ 0.79
UBE3DQ7Z6J8 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
UBE3DQ7Z6J8 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
UBE3DQ7Z6J8 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
UBE3DQ7Z6J8 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.01■□□□□ 0.79
UBE3DQ7Z6J8 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.01■□□□□ 0.79
UBE3DQ7Z6J8 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
UBE3DQ7Z6J8 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
UBE3DQ7Z6J8 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.01■□□□□ 0.79
UBE3DQ7Z6J8 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.01■□□□□ 0.79
UBE3DQ7Z6J8 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
UBE3DQ7Z6J8 AC104187.1-201ENST00000607510 612 ntBASIC20.01■□□□□ 0.79
UBE3DQ7Z6J8 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
UBE3DQ7Z6J8 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
UBE3DQ7Z6J8 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
UBE3DQ7Z6J8 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
UBE3DQ7Z6J8 AC061975.6-201ENST00000579045 1553 ntBASIC20■□□□□ 0.79
UBE3DQ7Z6J8 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
UBE3DQ7Z6J8 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
UBE3DQ7Z6J8 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20■□□□□ 0.79
UBE3DQ7Z6J8 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20■□□□□ 0.79
UBE3DQ7Z6J8 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20■□□□□ 0.79
UBE3DQ7Z6J8 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
UBE3DQ7Z6J8 RARRES2P6-201ENST00000567333 442 ntBASIC20■□□□□ 0.79
UBE3DQ7Z6J8 AC138907.5-202ENST00000569484 235 ntBASIC20■□□□□ 0.79
UBE3DQ7Z6J8 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20■□□□□ 0.79
UBE3DQ7Z6J8 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
UBE3DQ7Z6J8 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
UBE3DQ7Z6J8 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
UBE3DQ7Z6J8 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
UBE3DQ7Z6J8 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
UBE3DQ7Z6J8 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
UBE3DQ7Z6J8 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.99■□□□□ 0.79
UBE3DQ7Z6J8 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.99■□□□□ 0.79
UBE3DQ7Z6J8 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
UBE3DQ7Z6J8 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.99■□□□□ 0.79
UBE3DQ7Z6J8 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.99■□□□□ 0.79
UBE3DQ7Z6J8 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.99■□□□□ 0.79
UBE3DQ7Z6J8 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.99■□□□□ 0.79
UBE3DQ7Z6J8 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.99■□□□□ 0.79
UBE3DQ7Z6J8 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
UBE3DQ7Z6J8 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
UBE3DQ7Z6J8 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
UBE3DQ7Z6J8 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 AC034268.1-201ENST00000441047 882 ntBASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
UBE3DQ7Z6J8 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms