Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIM2P55344 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.02■□□□□ 0.8
LIM2P55344 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIM2P55344 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LIM2P55344 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LIM2P55344 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIM2P55344 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.02■□□□□ 0.8
LIM2P55344 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIM2P55344 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIM2P55344 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
LIM2P55344 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.02■□□□□ 0.8
LIM2P55344 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LIM2P55344 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIM2P55344 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.02■□□□□ 0.8
LIM2P55344 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.02■□□□□ 0.8
LIM2P55344 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.02■□□□□ 0.8
LIM2P55344 EEF1DP3-203ENST00000566025 782 ntBASIC20.02■□□□□ 0.8
LIM2P55344 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.02■□□□□ 0.8
LIM2P55344 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.02■□□□□ 0.8
LIM2P55344 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
LIM2P55344 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.02■□□□□ 0.8
LIM2P55344 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LIM2P55344 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIM2P55344 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIM2P55344 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.02■□□□□ 0.79
LIM2P55344 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIM2P55344 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIM2P55344 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.01■□□□□ 0.79
LIM2P55344 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIM2P55344 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIM2P55344 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
LIM2P55344 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIM2P55344 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.01■□□□□ 0.79
LIM2P55344 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIM2P55344 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIM2P55344 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.01■□□□□ 0.79
LIM2P55344 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIM2P55344 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20■□□□□ 0.79
LIM2P55344 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20■□□□□ 0.79
LIM2P55344 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIM2P55344 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIM2P55344 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20■□□□□ 0.79
LIM2P55344 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20■□□□□ 0.79
LIM2P55344 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20■□□□□ 0.79
LIM2P55344 AC053503.5-201ENST00000601508 636 ntBASIC20■□□□□ 0.79
LIM2P55344 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20■□□□□ 0.79
LIM2P55344 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
LIM2P55344 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIM2P55344 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20■□□□□ 0.79
LIM2P55344 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIM2P55344 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIM2P55344 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20■□□□□ 0.79
LIM2P55344 AC004854.2-201ENST00000608450 1441 ntBASIC20■□□□□ 0.79
LIM2P55344 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIM2P55344 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIM2P55344 AL024507.2-201ENST00000606070 2574 ntBASIC19.99■□□□□ 0.79
LIM2P55344 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIM2P55344 AP004607.4-201ENST00000530158 1459 ntBASIC19.99■□□□□ 0.79
LIM2P55344 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIM2P55344 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIM2P55344 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIM2P55344 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIM2P55344 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.99■□□□□ 0.79
LIM2P55344 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIM2P55344 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIM2P55344 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
LIM2P55344 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
LIM2P55344 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.99■□□□□ 0.79
LIM2P55344 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
LIM2P55344 MIR5787-201ENST00000611784 55 ntBASIC19.99■□□□□ 0.79
LIM2P55344 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIM2P55344 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
LIM2P55344 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIM2P55344 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIM2P55344 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.98■□□□□ 0.79
LIM2P55344 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIM2P55344 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIM2P55344 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.98■□□□□ 0.79
LIM2P55344 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIM2P55344 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIM2P55344 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
LIM2P55344 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIM2P55344 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIM2P55344 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIM2P55344 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.98■□□□□ 0.79
LIM2P55344 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
LIM2P55344 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
LIM2P55344 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIM2P55344 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIM2P55344 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIM2P55344 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIM2P55344 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIM2P55344 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIM2P55344 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.98■□□□□ 0.79
LIM2P55344 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.98■□□□□ 0.79
LIM2P55344 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.98■□□□□ 0.79
LIM2P55344 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.98■□□□□ 0.79
LIM2P55344 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.98■□□□□ 0.79
LIM2P55344 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.98■□□□□ 0.79
LIM2P55344 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms