Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.17■□□□□ 0.82
SEMA3DO95025 AC027612.3-201ENST00000413684 1047 ntBASIC20.17■□□□□ 0.82
SEMA3DO95025 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.17■□□□□ 0.82
SEMA3DO95025 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.17■□□□□ 0.82
SEMA3DO95025 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.17■□□□□ 0.82
SEMA3DO95025 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SEMA3DO95025 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.16■□□□□ 0.82
SEMA3DO95025 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SEMA3DO95025 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SEMA3DO95025 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SEMA3DO95025 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.16■□□□□ 0.82
SEMA3DO95025 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SEMA3DO95025 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SEMA3DO95025 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.16■□□□□ 0.82
SEMA3DO95025 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.16■□□□□ 0.82
SEMA3DO95025 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.16■□□□□ 0.82
SEMA3DO95025 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SEMA3DO95025 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.16■□□□□ 0.82
SEMA3DO95025 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
SEMA3DO95025 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SEMA3DO95025 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SEMA3DO95025 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.16■□□□□ 0.82
SEMA3DO95025 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
SEMA3DO95025 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
SEMA3DO95025 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SEMA3DO95025 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SEMA3DO95025 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
SEMA3DO95025 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.15■□□□□ 0.82
SEMA3DO95025 MIR6084-201ENST00000622012 110 ntBASIC20.15■□□□□ 0.82
SEMA3DO95025 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SEMA3DO95025 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
SEMA3DO95025 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SEMA3DO95025 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SEMA3DO95025 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SEMA3DO95025 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SEMA3DO95025 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SEMA3DO95025 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SEMA3DO95025 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SEMA3DO95025 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SEMA3DO95025 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.14■□□□□ 0.81
SEMA3DO95025 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
SEMA3DO95025 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SEMA3DO95025 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.14■□□□□ 0.81
SEMA3DO95025 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
SEMA3DO95025 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.14■□□□□ 0.81
SEMA3DO95025 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SEMA3DO95025 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.14■□□□□ 0.81
SEMA3DO95025 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SEMA3DO95025 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SEMA3DO95025 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
SEMA3DO95025 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.14■□□□□ 0.81
SEMA3DO95025 FEM1AP4-201ENST00000443167 1987 ntBASIC20.14■□□□□ 0.81
SEMA3DO95025 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.13■□□□□ 0.81
SEMA3DO95025 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SEMA3DO95025 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.13■□□□□ 0.81
SEMA3DO95025 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.13■□□□□ 0.81
SEMA3DO95025 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.13■□□□□ 0.81
SEMA3DO95025 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
SEMA3DO95025 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SEMA3DO95025 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SEMA3DO95025 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SEMA3DO95025 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.13■□□□□ 0.81
SEMA3DO95025 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.13■□□□□ 0.81
SEMA3DO95025 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SEMA3DO95025 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SEMA3DO95025 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SEMA3DO95025 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SEMA3DO95025 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SEMA3DO95025 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SEMA3DO95025 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SEMA3DO95025 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SEMA3DO95025 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SEMA3DO95025 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SEMA3DO95025 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.12■□□□□ 0.81
SEMA3DO95025 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SEMA3DO95025 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SEMA3DO95025 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SEMA3DO95025 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SEMA3DO95025 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SEMA3DO95025 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.12■□□□□ 0.81
SEMA3DO95025 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.12■□□□□ 0.81
SEMA3DO95025 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SEMA3DO95025 AL137060.1-201ENST00000618151 2648 ntBASIC20.12■□□□□ 0.81
SEMA3DO95025 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SEMA3DO95025 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms