Protein–RNA interactions for Protein: O94782

USP1, Ubiquitin carboxyl-terminal hydrolase 1, humanhuman

Predictions only

Length 785 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP1O94782 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.29■■□□□ 1
USP1O94782 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.29■■□□□ 1
USP1O94782 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.29■■□□□ 1
USP1O94782 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.29■■□□□ 1
USP1O94782 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.29■■□□□ 1
USP1O94782 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.29■■□□□ 1
USP1O94782 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
USP1O94782 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.29■■□□□ 1
USP1O94782 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.29■■□□□ 1
USP1O94782 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.29■■□□□ 1
USP1O94782 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
USP1O94782 AC009237.3-201ENST00000393279 1427 ntBASIC21.29■■□□□ 1
USP1O94782 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
USP1O94782 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP1O94782 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP1O94782 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP1O94782 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP1O94782 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP1O94782 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP1O94782 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP1O94782 EDA-201ENST00000338901 1233 ntBASIC21.28■■□□□ 1
USP1O94782 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.28■■□□□ 1
USP1O94782 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
USP1O94782 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
USP1O94782 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP1O94782 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.28■■□□□ 1
USP1O94782 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.28■■□□□ 1
USP1O94782 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP1O94782 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP1O94782 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
USP1O94782 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP1O94782 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP1O94782 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
USP1O94782 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP1O94782 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
USP1O94782 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP1O94782 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP1O94782 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.27■■□□□ 1
USP1O94782 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.27■■□□□ 1
USP1O94782 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.27■■□□□ 1
USP1O94782 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.27■■□□□ 1
USP1O94782 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.27■■□□□ 1
USP1O94782 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
USP1O94782 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
USP1O94782 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.27■■□□□ 1
USP1O94782 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP1O94782 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.27■■□□□ 1
USP1O94782 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.27■■□□□ 1
USP1O94782 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.27■■□□□ 1
USP1O94782 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP1O94782 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
USP1O94782 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.27■□□□□ 0.99
USP1O94782 TSPY26P-201ENST00000476365 1326 ntBASIC21.27■□□□□ 0.99
USP1O94782 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
USP1O94782 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP1O94782 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP1O94782 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP1O94782 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP1O94782 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP1O94782 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP1O94782 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP1O94782 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.26■□□□□ 0.99
USP1O94782 AP001330.3-201ENST00000520123 633 ntBASIC21.26■□□□□ 0.99
USP1O94782 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.26■□□□□ 0.99
USP1O94782 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP1O94782 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
USP1O94782 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP1O94782 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
USP1O94782 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
USP1O94782 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP1O94782 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP1O94782 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP1O94782 AL049796.1-201ENST00000565336 1766 ntBASIC21.25■□□□□ 0.99
USP1O94782 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP1O94782 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
USP1O94782 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.25■□□□□ 0.99
USP1O94782 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.25■□□□□ 0.99
USP1O94782 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
USP1O94782 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP1O94782 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP1O94782 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP1O94782 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP1O94782 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
USP1O94782 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.25■□□□□ 0.99
USP1O94782 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
USP1O94782 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP1O94782 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.25■□□□□ 0.99
USP1O94782 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.25■□□□□ 0.99
USP1O94782 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.25■□□□□ 0.99
USP1O94782 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.25■□□□□ 0.99
USP1O94782 AL355001.2-201ENST00000620617 1191 ntBASIC21.25■□□□□ 0.99
USP1O94782 AC105233.4-201ENST00000642045 216 ntBASIC21.25■□□□□ 0.99
USP1O94782 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.25■□□□□ 0.99
USP1O94782 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP1O94782 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP1O94782 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.24■□□□□ 0.99
USP1O94782 AC055733.4-201ENST00000638462 1354 ntBASIC21.24■□□□□ 0.99
USP1O94782 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP1O94782 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP1O94782 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms