Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4BO75351 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.6■□□□□ 0.89
VPS4BO75351 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4BO75351 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
VPS4BO75351 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS4BO75351 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
VPS4BO75351 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.6■□□□□ 0.89
VPS4BO75351 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4BO75351 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS4BO75351 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4BO75351 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4BO75351 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4BO75351 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS4BO75351 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS4BO75351 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS4BO75351 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS4BO75351 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
VPS4BO75351 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS4BO75351 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS4BO75351 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS4BO75351 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS4BO75351 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS4BO75351 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS4BO75351 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.59■□□□□ 0.89
VPS4BO75351 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS4BO75351 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS4BO75351 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.59■□□□□ 0.89
VPS4BO75351 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
VPS4BO75351 AC092437.1-201ENST00000624794 1048 ntBASIC20.59■□□□□ 0.89
VPS4BO75351 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS4BO75351 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS4BO75351 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS4BO75351 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS4BO75351 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
VPS4BO75351 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS4BO75351 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.58■□□□□ 0.89
VPS4BO75351 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS4BO75351 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS4BO75351 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS4BO75351 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.58■□□□□ 0.89
VPS4BO75351 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
VPS4BO75351 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS4BO75351 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
VPS4BO75351 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.58■□□□□ 0.88
VPS4BO75351 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS4BO75351 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.58■□□□□ 0.88
VPS4BO75351 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VPS4BO75351 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS4BO75351 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
VPS4BO75351 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS4BO75351 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
VPS4BO75351 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS4BO75351 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS4BO75351 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
VPS4BO75351 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS4BO75351 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS4BO75351 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS4BO75351 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS4BO75351 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.57■□□□□ 0.88
VPS4BO75351 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
VPS4BO75351 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS4BO75351 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.57■□□□□ 0.88
VPS4BO75351 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
VPS4BO75351 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS4BO75351 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.57■□□□□ 0.88
VPS4BO75351 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS4BO75351 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS4BO75351 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4BO75351 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4BO75351 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
VPS4BO75351 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
VPS4BO75351 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
VPS4BO75351 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS4BO75351 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4BO75351 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
VPS4BO75351 DUX4L2-201ENST00000561772 1275 ntBASIC20.56■□□□□ 0.88
VPS4BO75351 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS4BO75351 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.56■□□□□ 0.88
VPS4BO75351 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.56■□□□□ 0.88
VPS4BO75351 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.56■□□□□ 0.88
VPS4BO75351 DUX4L6-201ENST00000626483 1275 ntBASIC20.56■□□□□ 0.88
VPS4BO75351 DUX4L1-201ENST00000627662 1275 ntBASIC20.56■□□□□ 0.88
VPS4BO75351 DUX4L8-201ENST00000629013 1275 ntBASIC20.56■□□□□ 0.88
VPS4BO75351 DUX4L3-201ENST00000630187 1275 ntBASIC20.56■□□□□ 0.88
VPS4BO75351 DUX4L7-201ENST00000630678 1275 ntBASIC20.56■□□□□ 0.88
VPS4BO75351 DUX4L5-201ENST00000630834 1275 ntBASIC20.56■□□□□ 0.88
VPS4BO75351 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4BO75351 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
VPS4BO75351 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4BO75351 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4BO75351 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.56■□□□□ 0.88
VPS4BO75351 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4BO75351 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4BO75351 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4BO75351 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4BO75351 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4BO75351 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4BO75351 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
VPS4BO75351 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS4BO75351 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms