Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHOX2O60902 AC099778.1-201ENST00000568593 1911 ntBASIC21.2■□□□□ 0.98
SHOX2O60902 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC21.2■□□□□ 0.98
SHOX2O60902 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SHOX2O60902 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SHOX2O60902 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
SHOX2O60902 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
SHOX2O60902 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.2■□□□□ 0.98
SHOX2O60902 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHOX2O60902 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.2■□□□□ 0.98
SHOX2O60902 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SHOX2O60902 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHOX2O60902 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHOX2O60902 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.2■□□□□ 0.98
SHOX2O60902 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SHOX2O60902 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHOX2O60902 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.19■□□□□ 0.98
SHOX2O60902 MIR6765-201ENST00000614092 87 ntBASIC21.19■□□□□ 0.98
SHOX2O60902 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHOX2O60902 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHOX2O60902 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.19■□□□□ 0.98
SHOX2O60902 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.19■□□□□ 0.98
SHOX2O60902 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHOX2O60902 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
SHOX2O60902 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHOX2O60902 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHOX2O60902 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
SHOX2O60902 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.18■□□□□ 0.98
SHOX2O60902 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.18■□□□□ 0.98
SHOX2O60902 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHOX2O60902 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SHOX2O60902 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.18■□□□□ 0.98
SHOX2O60902 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHOX2O60902 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.18■□□□□ 0.98
SHOX2O60902 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SHOX2O60902 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.18■□□□□ 0.98
SHOX2O60902 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHOX2O60902 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.18■□□□□ 0.98
SHOX2O60902 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHOX2O60902 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.17■□□□□ 0.98
SHOX2O60902 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.17■□□□□ 0.98
SHOX2O60902 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC21.17■□□□□ 0.98
SHOX2O60902 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.17■□□□□ 0.98
SHOX2O60902 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SHOX2O60902 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHOX2O60902 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SHOX2O60902 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SHOX2O60902 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
SHOX2O60902 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.17■□□□□ 0.98
SHOX2O60902 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.17■□□□□ 0.98
SHOX2O60902 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHOX2O60902 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.17■□□□□ 0.98
SHOX2O60902 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHOX2O60902 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHOX2O60902 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.17■□□□□ 0.98
SHOX2O60902 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHOX2O60902 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.17■□□□□ 0.98
SHOX2O60902 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SHOX2O60902 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHOX2O60902 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHOX2O60902 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHOX2O60902 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHOX2O60902 AC004408.2-201ENST00000623613 2777 ntBASIC21.17■□□□□ 0.98
SHOX2O60902 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHOX2O60902 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHOX2O60902 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHOX2O60902 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHOX2O60902 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHOX2O60902 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHOX2O60902 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC21.16■□□□□ 0.98
SHOX2O60902 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHOX2O60902 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SHOX2O60902 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SHOX2O60902 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHOX2O60902 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.16■□□□□ 0.98
SHOX2O60902 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHOX2O60902 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHOX2O60902 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
SHOX2O60902 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHOX2O60902 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHOX2O60902 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHOX2O60902 U85056.1-201ENST00000616429 682 ntBASIC21.15■□□□□ 0.98
SHOX2O60902 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
SHOX2O60902 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
SHOX2O60902 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHOX2O60902 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.15■□□□□ 0.98
SHOX2O60902 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
SHOX2O60902 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.15■□□□□ 0.98
SHOX2O60902 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.15■□□□□ 0.98
SHOX2O60902 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.14■□□□□ 0.98
SHOX2O60902 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
SHOX2O60902 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SHOX2O60902 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.14■□□□□ 0.98
SHOX2O60902 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.14■□□□□ 0.98
SHOX2O60902 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SHOX2O60902 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHOX2O60902 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHOX2O60902 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SHOX2O60902 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.14■□□□□ 0.97
SHOX2O60902 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms