Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC18.05■□□□□ 0.48
XRCC3O43542 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC3O43542 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC3O43542 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC3O43542 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC3O43542 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC3O43542 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC3O43542 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC3O43542 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
XRCC3O43542 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC3O43542 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC3O43542 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC3O43542 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
XRCC3O43542 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC3O43542 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
XRCC3O43542 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC3O43542 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.04■□□□□ 0.48
XRCC3O43542 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC3O43542 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC3O43542 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.04■□□□□ 0.48
XRCC3O43542 CD72-202ENST00000378430 585 ntTSL 3 BASIC18.04■□□□□ 0.48
XRCC3O43542 TFPT-201ENST00000391757 774 ntTSL 5 BASIC18.04■□□□□ 0.48
XRCC3O43542 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC3O43542 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.04■□□□□ 0.48
XRCC3O43542 RBM38-205ENST00000440234 686 ntTSL 2 BASIC18.04■□□□□ 0.48
XRCC3O43542 AC241377.3-202ENST00000626088 1088 ntBASIC18.04■□□□□ 0.48
XRCC3O43542 AC241585.3-202ENST00000628937 1088 ntBASIC18.04■□□□□ 0.48
XRCC3O43542 AC245100.8-202ENST00000629247 1058 ntBASIC18.04■□□□□ 0.48
XRCC3O43542 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC3O43542 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.04■□□□□ 0.48
XRCC3O43542 PLK5-205ENST00000642079 1969 ntBASIC18.04■□□□□ 0.48
XRCC3O43542 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC3O43542 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.03■□□□□ 0.48
XRCC3O43542 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
XRCC3O43542 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
XRCC3O43542 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC3O43542 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.03■□□□□ 0.48
XRCC3O43542 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC3O43542 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
XRCC3O43542 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
XRCC3O43542 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC18.03■□□□□ 0.48
XRCC3O43542 HES6-204ENST00000409182 863 ntTSL 2 BASIC18.03■□□□□ 0.48
XRCC3O43542 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC3O43542 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.03■□□□□ 0.48
XRCC3O43542 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC3O43542 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC18.03■□□□□ 0.48
XRCC3O43542 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
XRCC3O43542 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.03■□□□□ 0.48
XRCC3O43542 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.03■□□□□ 0.48
XRCC3O43542 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.03■□□□□ 0.48
XRCC3O43542 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC3O43542 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
XRCC3O43542 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.03■□□□□ 0.48
XRCC3O43542 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC3O43542 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.03■□□□□ 0.48
XRCC3O43542 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC3O43542 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC3O43542 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC3O43542 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC3O43542 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC3O43542 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
XRCC3O43542 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.02■□□□□ 0.48
XRCC3O43542 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC3O43542 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC18.02■□□□□ 0.48
XRCC3O43542 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.02■□□□□ 0.48
XRCC3O43542 MTDHP2-201ENST00000601468 714 ntBASIC18.02■□□□□ 0.48
XRCC3O43542 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
XRCC3O43542 AC087239.1-201ENST00000622671 572 ntBASIC18.02■□□□□ 0.48
XRCC3O43542 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.02■□□□□ 0.47
XRCC3O43542 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.02■□□□□ 0.47
XRCC3O43542 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
XRCC3O43542 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
XRCC3O43542 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
XRCC3O43542 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC3O43542 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.01■□□□□ 0.47
XRCC3O43542 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
XRCC3O43542 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
XRCC3O43542 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC3O43542 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC3O43542 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC3O43542 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC3O43542 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC3O43542 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.01■□□□□ 0.47
XRCC3O43542 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC3O43542 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
XRCC3O43542 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC3O43542 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.01■□□□□ 0.47
XRCC3O43542 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC3O43542 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC3O43542 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
XRCC3O43542 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC3O43542 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.01■□□□□ 0.47
XRCC3O43542 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC3O43542 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
XRCC3O43542 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC3O43542 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18■□□□□ 0.47
XRCC3O43542 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18■□□□□ 0.47
XRCC3O43542 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC18■□□□□ 0.47
XRCC3O43542 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
XRCC3O43542 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms