Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NKX3-1Q99801 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NKX3-1Q99801 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
NKX3-1Q99801 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
NKX3-1Q99801 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NKX3-1Q99801 AL136116.3-201ENST00000402907 1138 ntBASIC18.38■□□□□ 0.53
NKX3-1Q99801 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC18.38■□□□□ 0.53
NKX3-1Q99801 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NKX3-1Q99801 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC18.38■□□□□ 0.53
NKX3-1Q99801 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.38■□□□□ 0.53
NKX3-1Q99801 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
NKX3-1Q99801 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NKX3-1Q99801 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NKX3-1Q99801 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
NKX3-1Q99801 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NKX3-1Q99801 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NKX3-1Q99801 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX3-1Q99801 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NKX3-1Q99801 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.37■□□□□ 0.53
NKX3-1Q99801 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX3-1Q99801 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.37■□□□□ 0.53
NKX3-1Q99801 AC131281.2-201ENST00000520478 145 ntBASIC18.37■□□□□ 0.53
NKX3-1Q99801 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.37■□□□□ 0.53
NKX3-1Q99801 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.37■□□□□ 0.53
NKX3-1Q99801 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.37■□□□□ 0.53
NKX3-1Q99801 MIR3621-201ENST00000580529 85 ntBASIC18.37■□□□□ 0.53
NKX3-1Q99801 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
NKX3-1Q99801 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX3-1Q99801 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.37■□□□□ 0.53
NKX3-1Q99801 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.37■□□□□ 0.53
NKX3-1Q99801 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NKX3-1Q99801 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NKX3-1Q99801 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
NKX3-1Q99801 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NKX3-1Q99801 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NKX3-1Q99801 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NKX3-1Q99801 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
NKX3-1Q99801 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
NKX3-1Q99801 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC18.36■□□□□ 0.53
NKX3-1Q99801 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NKX3-1Q99801 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.36■□□□□ 0.53
NKX3-1Q99801 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.36■□□□□ 0.53
NKX3-1Q99801 AC104564.3-201ENST00000582367 638 ntBASIC18.36■□□□□ 0.53
NKX3-1Q99801 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NKX3-1Q99801 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
NKX3-1Q99801 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC18.36■□□□□ 0.53
NKX3-1Q99801 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
NKX3-1Q99801 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NKX3-1Q99801 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
NKX3-1Q99801 PCDHAC2-203ENST00000615316 3011 ntBASIC18.36■□□□□ 0.53
NKX3-1Q99801 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.35■□□□□ 0.53
NKX3-1Q99801 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.35■□□□□ 0.53
NKX3-1Q99801 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.35■□□□□ 0.53
NKX3-1Q99801 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
NKX3-1Q99801 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX3-1Q99801 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX3-1Q99801 AC092667.1-201ENST00000434301 2586 ntBASIC18.35■□□□□ 0.53
NKX3-1Q99801 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
NKX3-1Q99801 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NKX3-1Q99801 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NKX3-1Q99801 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC18.35■□□□□ 0.53
NKX3-1Q99801 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC18.35■□□□□ 0.53
NKX3-1Q99801 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX3-1Q99801 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX3-1Q99801 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.35■□□□□ 0.53
NKX3-1Q99801 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.35■□□□□ 0.53
NKX3-1Q99801 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX3-1Q99801 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.35■□□□□ 0.53
NKX3-1Q99801 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.35■□□□□ 0.53
NKX3-1Q99801 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX3-1Q99801 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX3-1Q99801 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
NKX3-1Q99801 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NKX3-1Q99801 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
NKX3-1Q99801 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX3-1Q99801 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX3-1Q99801 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
NKX3-1Q99801 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX3-1Q99801 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NKX3-1Q99801 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.34■□□□□ 0.53
NKX3-1Q99801 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.34■□□□□ 0.53
NKX3-1Q99801 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX3-1Q99801 OR2I1P-207ENST00000453522 948 ntBASIC18.34■□□□□ 0.53
NKX3-1Q99801 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NKX3-1Q99801 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC18.34■□□□□ 0.53
NKX3-1Q99801 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
NKX3-1Q99801 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
NKX3-1Q99801 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
NKX3-1Q99801 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
NKX3-1Q99801 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX3-1Q99801 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX3-1Q99801 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX3-1Q99801 AL391422.3-201ENST00000603791 2761 ntBASIC18.34■□□□□ 0.53
NKX3-1Q99801 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX3-1Q99801 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
NKX3-1Q99801 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
NKX3-1Q99801 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
NKX3-1Q99801 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.33■□□□□ 0.53
NKX3-1Q99801 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.33■□□□□ 0.53
NKX3-1Q99801 AC003102.1-202ENST00000563394 1796 ntBASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms