Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NR1H4Q96RI1 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.9■□□□□ 0.78
NR1H4Q96RI1 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
NR1H4Q96RI1 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NR1H4Q96RI1 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
NR1H4Q96RI1 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
NR1H4Q96RI1 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
NR1H4Q96RI1 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NR1H4Q96RI1 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC19.9■□□□□ 0.78
NR1H4Q96RI1 CA15P2-201ENST00000611168 834 ntBASIC19.9■□□□□ 0.78
NR1H4Q96RI1 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NR1H4Q96RI1 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.9■□□□□ 0.78
NR1H4Q96RI1 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.9■□□□□ 0.78
NR1H4Q96RI1 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
NR1H4Q96RI1 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.9■□□□□ 0.78
NR1H4Q96RI1 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NR1H4Q96RI1 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
NR1H4Q96RI1 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
NR1H4Q96RI1 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NR1H4Q96RI1 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NR1H4Q96RI1 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NR1H4Q96RI1 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NR1H4Q96RI1 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NR1H4Q96RI1 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
NR1H4Q96RI1 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.89■□□□□ 0.77
NR1H4Q96RI1 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.89■□□□□ 0.77
NR1H4Q96RI1 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.89■□□□□ 0.77
NR1H4Q96RI1 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NR1H4Q96RI1 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NR1H4Q96RI1 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NR1H4Q96RI1 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
NR1H4Q96RI1 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
NR1H4Q96RI1 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 AC009831.1-201ENST00000580420 1582 ntBASIC19.88■□□□□ 0.77
NR1H4Q96RI1 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NR1H4Q96RI1 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NR1H4Q96RI1 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NR1H4Q96RI1 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
NR1H4Q96RI1 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
NR1H4Q96RI1 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NR1H4Q96RI1 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NR1H4Q96RI1 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NR1H4Q96RI1 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.87■□□□□ 0.77
NR1H4Q96RI1 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
NR1H4Q96RI1 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
NR1H4Q96RI1 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NR1H4Q96RI1 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NR1H4Q96RI1 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NR1H4Q96RI1 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 AC104564.3-201ENST00000582367 638 ntBASIC19.86■□□□□ 0.77
NR1H4Q96RI1 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NR1H4Q96RI1 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
NR1H4Q96RI1 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.85■□□□□ 0.77
NR1H4Q96RI1 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NR1H4Q96RI1 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NR1H4Q96RI1 RNF126P1-201ENST00000567452 1320 ntBASIC19.85■□□□□ 0.77
NR1H4Q96RI1 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
NR1H4Q96RI1 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC19.85■□□□□ 0.77
NR1H4Q96RI1 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
NR1H4Q96RI1 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NR1H4Q96RI1 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms