Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SKA1Q96BD8 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SKA1Q96BD8 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SKA1Q96BD8 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
SKA1Q96BD8 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
SKA1Q96BD8 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SKA1Q96BD8 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
SKA1Q96BD8 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
SKA1Q96BD8 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SKA1Q96BD8 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.64■■□□□ 1.05
SKA1Q96BD8 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SKA1Q96BD8 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SKA1Q96BD8 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.64■■□□□ 1.05
SKA1Q96BD8 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.64■■□□□ 1.05
SKA1Q96BD8 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SKA1Q96BD8 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SKA1Q96BD8 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SKA1Q96BD8 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SKA1Q96BD8 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
SKA1Q96BD8 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SKA1Q96BD8 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SKA1Q96BD8 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
SKA1Q96BD8 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SKA1Q96BD8 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.63■■□□□ 1.05
SKA1Q96BD8 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
SKA1Q96BD8 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.63■■□□□ 1.05
SKA1Q96BD8 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SKA1Q96BD8 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SKA1Q96BD8 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SKA1Q96BD8 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.62■■□□□ 1.05
SKA1Q96BD8 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SKA1Q96BD8 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.62■■□□□ 1.05
SKA1Q96BD8 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
SKA1Q96BD8 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
SKA1Q96BD8 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.62■■□□□ 1.05
SKA1Q96BD8 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.62■■□□□ 1.05
SKA1Q96BD8 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SKA1Q96BD8 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.62■■□□□ 1.05
SKA1Q96BD8 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.62■■□□□ 1.05
SKA1Q96BD8 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.62■■□□□ 1.05
SKA1Q96BD8 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SKA1Q96BD8 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.62■■□□□ 1.05
SKA1Q96BD8 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.62■■□□□ 1.05
SKA1Q96BD8 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SKA1Q96BD8 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SKA1Q96BD8 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.61■■□□□ 1.05
SKA1Q96BD8 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SKA1Q96BD8 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.61■■□□□ 1.05
SKA1Q96BD8 OXCT2P1-201ENST00000447263 1535 ntBASIC21.61■■□□□ 1.05
SKA1Q96BD8 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.61■■□□□ 1.05
SKA1Q96BD8 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.61■■□□□ 1.05
SKA1Q96BD8 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SKA1Q96BD8 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SKA1Q96BD8 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.61■■□□□ 1.05
SKA1Q96BD8 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.61■■□□□ 1.05
SKA1Q96BD8 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SKA1Q96BD8 KRT18P11-201ENST00000435214 1283 ntBASIC21.61■■□□□ 1.05
SKA1Q96BD8 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.61■■□□□ 1.05
SKA1Q96BD8 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.61■■□□□ 1.05
SKA1Q96BD8 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.61■■□□□ 1.05
SKA1Q96BD8 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
SKA1Q96BD8 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SKA1Q96BD8 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
SKA1Q96BD8 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
SKA1Q96BD8 AC005229.4-201ENST00000610085 2198 ntBASIC21.6■■□□□ 1.05
SKA1Q96BD8 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.6■■□□□ 1.05
SKA1Q96BD8 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SKA1Q96BD8 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SKA1Q96BD8 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.6■■□□□ 1.05
SKA1Q96BD8 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.6■■□□□ 1.05
SKA1Q96BD8 SMUG1P1-201ENST00000590640 811 ntBASIC21.6■■□□□ 1.05
SKA1Q96BD8 BID-214ENST00000617586 542 ntTSL 5 BASIC21.6■■□□□ 1.05
SKA1Q96BD8 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SKA1Q96BD8 AP004607.4-201ENST00000530158 1459 ntBASIC21.59■■□□□ 1.05
SKA1Q96BD8 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SKA1Q96BD8 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SKA1Q96BD8 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
SKA1Q96BD8 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.59■■□□□ 1.05
SKA1Q96BD8 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
SKA1Q96BD8 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.59■■□□□ 1.05
SKA1Q96BD8 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SKA1Q96BD8 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.59■■□□□ 1.05
SKA1Q96BD8 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
SKA1Q96BD8 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
SKA1Q96BD8 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SKA1Q96BD8 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SKA1Q96BD8 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SKA1Q96BD8 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SKA1Q96BD8 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SKA1Q96BD8 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SKA1Q96BD8 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SKA1Q96BD8 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SKA1Q96BD8 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SKA1Q96BD8 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SKA1Q96BD8 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.58■■□□□ 1.05
SKA1Q96BD8 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.58■■□□□ 1.05
SKA1Q96BD8 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.58■■□□□ 1.05
SKA1Q96BD8 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SKA1Q96BD8 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SKA1Q96BD8 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.58■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms