Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC008175.2-201ENST00000612840 297 ntBASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 RBM17P2-201ENST00000616397 1405 ntBASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
SMC1BQ8NDV3 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SMC1BQ8NDV3 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SMC1BQ8NDV3 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
SMC1BQ8NDV3 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC25.34■■□□□ 1.65
SMC1BQ8NDV3 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC25.34■■□□□ 1.65
SMC1BQ8NDV3 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC25.33■■□□□ 1.65
SMC1BQ8NDV3 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SMC1BQ8NDV3 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SMC1BQ8NDV3 RNF146-204ENST00000476956 884 ntTSL 2 BASIC25.33■■□□□ 1.65
SMC1BQ8NDV3 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
SMC1BQ8NDV3 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC25.33■■□□□ 1.65
SMC1BQ8NDV3 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC25.33■■□□□ 1.65
SMC1BQ8NDV3 SNX21-213ENST00000614929 587 ntTSL 5 BASIC25.33■■□□□ 1.65
SMC1BQ8NDV3 FGF8-207ENST00000618991 856 ntTSL 3 BASIC25.33■■□□□ 1.65
SMC1BQ8NDV3 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC25.33■■□□□ 1.65
SMC1BQ8NDV3 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
SMC1BQ8NDV3 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
SMC1BQ8NDV3 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
SMC1BQ8NDV3 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC25.32■■□□□ 1.64
SMC1BQ8NDV3 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SMC1BQ8NDV3 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SMC1BQ8NDV3 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
SMC1BQ8NDV3 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC25.32■■□□□ 1.64
SMC1BQ8NDV3 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SMC1BQ8NDV3 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SMC1BQ8NDV3 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SMC1BQ8NDV3 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC25.32■■□□□ 1.64
SMC1BQ8NDV3 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SMC1BQ8NDV3 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 OR2A1-AS1-207ENST00000486094 819 ntBASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 SOX15-203ENST00000570788 1093 ntBASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 AP004607.7-201ENST00000527152 1677 ntBASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC25.31■■□□□ 1.64
SMC1BQ8NDV3 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC25.3■■□□□ 1.64
SMC1BQ8NDV3 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SMC1BQ8NDV3 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SMC1BQ8NDV3 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SMC1BQ8NDV3 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC25.3■■□□□ 1.64
SMC1BQ8NDV3 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SMC1BQ8NDV3 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SMC1BQ8NDV3 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 AL353803.4-201ENST00000565882 1934 ntBASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 AL135905.2-201ENST00000584934 1404 ntBASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 DUSP8P4-201ENST00000399538 1761 ntBASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 AL355472.2-201ENST00000422958 438 ntBASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 AL355075.4-201ENST00000554988 638 ntBASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SMC1BQ8NDV3 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
SMC1BQ8NDV3 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
SMC1BQ8NDV3 POU5F1P4-201ENST00000413175 1085 ntBASIC25.28■■□□□ 1.64
SMC1BQ8NDV3 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC25.28■■□□□ 1.64
SMC1BQ8NDV3 AC243732.1-201ENST00000612648 864 ntBASIC25.28■■□□□ 1.64
SMC1BQ8NDV3 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC25.28■■□□□ 1.64
SMC1BQ8NDV3 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
SMC1BQ8NDV3 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC25.28■■□□□ 1.64
SMC1BQ8NDV3 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SMC1BQ8NDV3 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC25.27■■□□□ 1.64
SMC1BQ8NDV3 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms