Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF540Q8NDQ6 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
ZNF540Q8NDQ6 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.49■□□□□ 0.71
ZNF540Q8NDQ6 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF540Q8NDQ6 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.49■□□□□ 0.71
ZNF540Q8NDQ6 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
ZNF540Q8NDQ6 DUX4L4-201ENST00000566884 1269 ntBASIC19.49■□□□□ 0.71
ZNF540Q8NDQ6 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.49■□□□□ 0.71
ZNF540Q8NDQ6 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.49■□□□□ 0.71
ZNF540Q8NDQ6 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF540Q8NDQ6 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
ZNF540Q8NDQ6 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
ZNF540Q8NDQ6 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF540Q8NDQ6 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF540Q8NDQ6 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.48■□□□□ 0.71
ZNF540Q8NDQ6 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF540Q8NDQ6 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF540Q8NDQ6 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF540Q8NDQ6 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
ZNF540Q8NDQ6 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF540Q8NDQ6 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
ZNF540Q8NDQ6 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
ZNF540Q8NDQ6 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 AC133561.4-201ENST00000566112 224 ntBASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
ZNF540Q8NDQ6 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 AC104564.3-201ENST00000582367 638 ntBASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 MIR4466-201ENST00000606121 54 ntBASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
ZNF540Q8NDQ6 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF540Q8NDQ6 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF540Q8NDQ6 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.44■□□□□ 0.7
ZNF540Q8NDQ6 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF540Q8NDQ6 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF540Q8NDQ6 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
ZNF540Q8NDQ6 AC096631.2-201ENST00000436136 790 ntBASIC19.44■□□□□ 0.7
ZNF540Q8NDQ6 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
ZNF540Q8NDQ6 AL512631.2-201ENST00000604634 923 ntBASIC19.44■□□□□ 0.7
ZNF540Q8NDQ6 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
ZNF540Q8NDQ6 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF540Q8NDQ6 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF540Q8NDQ6 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
ZNF540Q8NDQ6 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
ZNF540Q8NDQ6 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF540Q8NDQ6 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms