Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00643Q86TS7 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC13.27□□□□□ -0.28
LINC00643Q86TS7 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00643Q86TS7 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00643Q86TS7 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00643Q86TS7 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00643Q86TS7 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00643Q86TS7 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
LINC00643Q86TS7 AC116562.4-201ENST00000641316 2276 ntBASIC13.27□□□□□ -0.28
LINC00643Q86TS7 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC13.27□□□□□ -0.29
LINC00643Q86TS7 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 AL032819.2-201ENST00000624543 2162 ntBASIC13.26□□□□□ -0.29
LINC00643Q86TS7 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 AIRN-201ENST00000601203 4374 ntBASIC13.26□□□□□ -0.29
LINC00643Q86TS7 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00643Q86TS7 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 AC005332.8-201ENST00000622750 2735 ntBASIC13.25□□□□□ -0.29
LINC00643Q86TS7 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
LINC00643Q86TS7 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms