Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 SLC47A1P1-202ENST00000449666 945 ntBASIC20.48■□□□□ 0.87
RNF111Q6ZNA4 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RNF111Q6ZNA4 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF111Q6ZNA4 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF111Q6ZNA4 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF111Q6ZNA4 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF111Q6ZNA4 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF111Q6ZNA4 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
RNF111Q6ZNA4 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
RNF111Q6ZNA4 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF111Q6ZNA4 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 AC005837.3-201ENST00000612163 286 ntBASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
RNF111Q6ZNA4 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 AP001330.3-201ENST00000520123 633 ntBASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 AC027682.1-201ENST00000562846 899 ntBASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 AF213884.3-201ENST00000563833 479 ntBASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 AC142381.2-201ENST00000566120 298 ntBASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 AC010525.1-201ENST00000585559 441 ntBASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 AC008764.7-201ENST00000593779 1081 ntBASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 AC233992.3-201ENST00000607491 485 ntBASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
RNF111Q6ZNA4 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 AL031432.3-201ENST00000607698 485 ntBASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.45■□□□□ 0.86
RNF111Q6ZNA4 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF111Q6ZNA4 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF111Q6ZNA4 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF111Q6ZNA4 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.44■□□□□ 0.86
RNF111Q6ZNA4 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF111Q6ZNA4 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF111Q6ZNA4 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF111Q6ZNA4 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.44■□□□□ 0.86
RNF111Q6ZNA4 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.44■□□□□ 0.86
RNF111Q6ZNA4 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
RNF111Q6ZNA4 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.44■□□□□ 0.86
RNF111Q6ZNA4 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF111Q6ZNA4 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.44■□□□□ 0.86
RNF111Q6ZNA4 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 MIR939-201ENST00000401314 82 ntBASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 AC099791.1-201ENST00000416440 715 ntBASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 SUDS3P1-201ENST00000505831 966 ntBASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.43■□□□□ 0.86
RNF111Q6ZNA4 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms