Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GCA-201ENST00000233612 1694 ntTSL 2 BASIC26.12■■□□□ 1.77
CCDC88AQ3V6T2 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
CCDC88AQ3V6T2 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC26.12■■□□□ 1.77
CCDC88AQ3V6T2 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC26.12■■□□□ 1.77
CCDC88AQ3V6T2 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
CCDC88AQ3V6T2 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 AC079089.2-201ENST00000531211 1277 ntBASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 LINC01023-201ENST00000606054 436 ntBASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CCDC88AQ3V6T2 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
CCDC88AQ3V6T2 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
CCDC88AQ3V6T2 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC26.1■■□□□ 1.77
CCDC88AQ3V6T2 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC26.1■■□□□ 1.77
CCDC88AQ3V6T2 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
CCDC88AQ3V6T2 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 OR2A1-AS1-201ENST00000462305 773 ntBASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 THRA-202ENST00000394121 2260 ntTSL 2 BASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 AP006587.3-201ENST00000525742 1516 ntBASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
CCDC88AQ3V6T2 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 CBFB-203ENST00000561924 584 ntTSL 5 BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 AL162412.1-201ENST00000567129 965 ntBASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 AC010331.1-201ENST00000611423 582 ntBASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC26.08■■□□□ 1.77
CCDC88AQ3V6T2 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC26.08■■□□□ 1.76
CCDC88AQ3V6T2 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 AC060766.5-201ENST00000590539 871 ntBASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 LINC00526-201ENST00000581067 1875 ntBASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC88AQ3V6T2 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC26.06■■□□□ 1.76
CCDC88AQ3V6T2 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC26.06■■□□□ 1.76
CCDC88AQ3V6T2 C1QBPP2-201ENST00000528754 825 ntBASIC26.06■■□□□ 1.76
CCDC88AQ3V6T2 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC26.06■■□□□ 1.76
CCDC88AQ3V6T2 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC26.06■■□□□ 1.76
CCDC88AQ3V6T2 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC26.06■■□□□ 1.76
CCDC88AQ3V6T2 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC26.06■■□□□ 1.76
CCDC88AQ3V6T2 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC26.06■■□□□ 1.76
CCDC88AQ3V6T2 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
CCDC88AQ3V6T2 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC88AQ3V6T2 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC88AQ3V6T2 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC88AQ3V6T2 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC26.06■■□□□ 1.76
CCDC88AQ3V6T2 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC88AQ3V6T2 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC26.05■■□□□ 1.76
CCDC88AQ3V6T2 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC88AQ3V6T2 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC88AQ3V6T2 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC88AQ3V6T2 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC88AQ3V6T2 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC26.05■■□□□ 1.76
CCDC88AQ3V6T2 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms