Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
HSPG2P98160 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC13.31□□□□□ -0.28
HSPG2P98160 PNMA6B-201ENST00000538162 1200 ntBASIC13.31□□□□□ -0.28
HSPG2P98160 AC060766.5-201ENST00000590539 871 ntBASIC13.31□□□□□ -0.28
HSPG2P98160 FGF8-207ENST00000618991 856 ntTSL 3 BASIC13.31□□□□□ -0.28
HSPG2P98160 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC13.31□□□□□ -0.28
HSPG2P98160 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC13.31□□□□□ -0.28
HSPG2P98160 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC13.3□□□□□ -0.28
HSPG2P98160 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
HSPG2P98160 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HSPG2P98160 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC13.3□□□□□ -0.28
HSPG2P98160 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC13.3□□□□□ -0.28
HSPG2P98160 RBM42-202ENST00000586618 771 ntTSL 3 BASIC13.3□□□□□ -0.28
HSPG2P98160 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HSPG2P98160 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HSPG2P98160 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
HSPG2P98160 FXN-202ENST00000396364 980 ntTSL 5 BASIC13.3□□□□□ -0.28
HSPG2P98160 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HSPG2P98160 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HSPG2P98160 DHDH-203ENST00000522614 776 ntTSL 5 BASIC13.3□□□□□ -0.28
HSPG2P98160 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HSPG2P98160 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HSPG2P98160 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HSPG2P98160 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HSPG2P98160 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
HSPG2P98160 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC13.29□□□□□ -0.28
HSPG2P98160 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC13.29□□□□□ -0.28
HSPG2P98160 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HSPG2P98160 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
HSPG2P98160 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC13.29□□□□□ -0.28
HSPG2P98160 MTDHP1-201ENST00000605323 784 ntBASIC13.29□□□□□ -0.28
HSPG2P98160 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
HSPG2P98160 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HSPG2P98160 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HSPG2P98160 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC13.29□□□□□ -0.28
HSPG2P98160 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
HSPG2P98160 KRT17P2-201ENST00000300992 1314 ntBASIC13.29□□□□□ -0.28
HSPG2P98160 CRAT-202ENST00000393384 973 ntTSL 2 BASIC13.29□□□□□ -0.28
HSPG2P98160 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
HSPG2P98160 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HSPG2P98160 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HSPG2P98160 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC13.29□□□□□ -0.28
HSPG2P98160 AL023875.1-201ENST00000640777 796 ntBASIC13.29□□□□□ -0.28
HSPG2P98160 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HSPG2P98160 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HSPG2P98160 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HSPG2P98160 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC13.28□□□□□ -0.28
HSPG2P98160 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC13.28□□□□□ -0.28
HSPG2P98160 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC13.28□□□□□ -0.28
HSPG2P98160 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HSPG2P98160 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HSPG2P98160 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
HSPG2P98160 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HSPG2P98160 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
HSPG2P98160 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
HSPG2P98160 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC13.28□□□□□ -0.28
HSPG2P98160 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HSPG2P98160 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HSPG2P98160 TK2-204ENST00000525974 1178 ntTSL 2 BASIC13.28□□□□□ -0.28
HSPG2P98160 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HSPG2P98160 AL121749.1-202ENST00000609313 2153 ntBASIC13.28□□□□□ -0.28
HSPG2P98160 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
HSPG2P98160 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HSPG2P98160 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HSPG2P98160 KRT17P3-201ENST00000420566 1262 ntBASIC13.27□□□□□ -0.28
HSPG2P98160 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC13.27□□□□□ -0.28
HSPG2P98160 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC13.27□□□□□ -0.28
HSPG2P98160 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HSPG2P98160 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC13.27□□□□□ -0.28
HSPG2P98160 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HSPG2P98160 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HSPG2P98160 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HSPG2P98160 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HSPG2P98160 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HSPG2P98160 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
HSPG2P98160 AP006587.3-201ENST00000525742 1516 ntBASIC13.27□□□□□ -0.28
HSPG2P98160 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.28
HSPG2P98160 KRT18P57-201ENST00000443599 1254 ntBASIC13.27□□□□□ -0.28
HSPG2P98160 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HSPG2P98160 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
HSPG2P98160 AL590326.2-201ENST00000625139 305 ntBASIC13.27□□□□□ -0.28
HSPG2P98160 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.28
HSPG2P98160 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
HSPG2P98160 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HSPG2P98160 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HSPG2P98160 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HSPG2P98160 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms